PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400010525

Common Name

LOC102581691

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

YABBY

Protein Properties

Length: 192aa MW: 21272 Da PI: 8.6049

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400010525	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	236.3	6.8e-73	7	164	3	170
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekees 91 ssse+vCyv+CnfC+tilavs+P +s++++vtvrCGhC++llsvn+a + q l+ ++ l+++ + ++ + + + + ++++s PGSC0003DMP400010525 7 YSSSSERVCYVHCNFCSTILAVSIPCNSMMTIVTVRCGHCANLLSVNIAPSLQSLPIQD-LQRQNESSIEDGM------SRGYGSSSSS 88 5789***************************************************99.5554444443333......2333444444 PP YABBY 92 astsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +++ ++ + +++ d++ pr pp irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl PGSC0003DMP400010525 89 TNSFHRFSPIPT--DHDQPRSPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 164 444455555555..556688888.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.6E-73	10	164	IPR006780	YABBY protein
SuperFamily	SSF47095	8.38E-9	103	157	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.6E-5	112	158	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MSLDMTYSSS SERVCYVHCN FCSTILAVSI PCNSMMTIVT VRCGHCANLL SVNIAPSLQS 60 LPIQDLQRQN ESSIEDGMSR GYGSSSSSTN SFHRFSPIPT DHDQPRSPPI RPPEKRQRVP 120 SAYNRFIKEE IQRIKASNPD ISHREAFSTA AKNWAHFPHI HFGLKLDGNK QTNKLDHAVA 180 GEGPQKTIGL Y*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400010525

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ667767	0.0	KJ667767.1 Solanum virginianum YAB2 protein mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006361110.1	1e-142	PREDICTED: putative axial regulator YABBY 2 isoform X2
Swissprot	Q9XFB0	2e-78	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	M1A5M2	1e-141	M1A5M2_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400015197	1e-142	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	9e-77	YABBY family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400010525
Entrez Gene	102581691

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]