PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400010350 | ||||||||
Common Name | LOC102604975 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | WRKY | ||||||||
Protein Properties | Length: 306aa MW: 34069.8 Da PI: 7.4034 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 55.8 | 9e-18 | 122 | 172 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 dDgy+WrKYGqK++ g+ fpr YrCts ++++rs+ d +v+eit++g H++ PGSC0003DMP400010350 122 DDGYSWRKYGQKDILGAVFPRDCYRCTS------RHMQRSDVDRTVFEITNKGYHTC 172 8**************************7......689******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.2E-16 | 108 | 172 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.15E-15 | 120 | 172 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.9E-18 | 121 | 174 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-14 | 122 | 172 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 13.701 | 122 | 170 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MDYDSLINKL TQGMEHTKQL RTYLSSVAST SKAIPELLLQ KILSSYEQSL LILKWSGSPV 60 QSVPAAPAIE SMVSGDVKPR SDDNKRSSED HQKLIHISKR RKPYFSEQVR VKSESEVEGP 120 QDDGYSWRKY GQKDILGAVF PRDCYRCTSR HMQRSDVDRT VFEITNKGYH TCLRHQVTNS 180 TLQATSPEKE ASHHGVIVGG CSSSFVSPTT PESNYLSISN CQMNGLGIAH NLDHSESYPS 240 DIGLFRDLHH SDSDRTDISA NTSTTSSSMG GEFARLSGGR PDFSIWTKRH PQTKANTPQK 300 DDKDE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:20409006). May regulate the early events of leaf senescence (PubMed:17369373, PubMed:20409006). Negatively regulates the expression of ESR/ESP (PubMed:20409006). Together with WRKY46 and WRKY70, promotes resistance to P.syringae, probably by enhancing salicylic acid (SA)- dependent genes. Contributes to the suppression of jasmonic acid (MeJA)-induced expression of PDF1.2 (PubMed:22325892). {ECO:0000269|PubMed:17369373, ECO:0000269|PubMed:20409006, ECO:0000269|PubMed:22325892}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400010350 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA) (PubMed:22268143, PubMed:22325892). Strong accumulation during leaf senescence (PubMed:22268143). Down-regulated by jasmonate. Triggered by P.syringae (PubMed:22325892). {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11506370, ECO:0000269|PubMed:17369373, ECO:0000269|PubMed:22268143, ECO:0000269|PubMed:22325892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 1e-173 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015166339.1 | 0.0 | PREDICTED: probable WRKY transcription factor 53 isoform X2 | ||||
Swissprot | Q9SUP6 | 3e-32 | WRK53_ARATH; Probable WRKY transcription factor 53 | ||||
TrEMBL | M1A560 | 0.0 | M1A560_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400014951 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1843 | 24 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23810.1 | 1e-34 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400010350 |
Entrez Gene | 102604975 |