PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400010146
Common NameLOC102591506
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 277aa    MW: 31123.9 Da    PI: 5.8268
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400010146genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.55e-08157204455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR +iN+++  L++++P +     k +  a +L + ++Y++sLq
  PGSC0003DMP400010146 157 SHSLAERVRRGKINERLRCLQDIVPGC----YKTMGMAGMLDEIINYVQSLQ 204
                           8*************************8....35599999********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.28E-8151207No hitNo description
SuperFamilySSF474595.23E-16151221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.027153203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-15153215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-5157204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-7159209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MADHQFNSDI QNFITNSPFS LLNFDSSIDL MNQFPDMMNI PCSSDMSSFN IQSSMEFSND  60
NVFTQVADQF PGSLQEIFQG NIQQESKTEE INDSKKRKIS DTPESSSAYS SPAASATGNK  120
RRNTKGRGNR VKSDEKEEEK PREVVHVRAK RGQATDSHSL AERVRRGKIN ERLRCLQDIV  180
PGCYKTMGMA GMLDEIINYV QSLQNQVDFL SMKLTAASSY YDFNSESDIL VSLQRAKAYE  240
ALKMQKMMKK EIGCEVMSSN QVGPNFGSYP MLPYNT*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400010146
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-162HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006341598.10.0PREDICTED: transcription factor BEE 3
SwissprotQ8GWK72e-63BEE3_ARATH; Transcription factor BEE 3
TrEMBLM1A4N30.0M1A4N3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000146560.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39712344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.13e-60BR enhanced expression 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]