PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400009991
Common NameLOC102598012
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WOX
Protein Properties Length: 392aa    MW: 44133.8 Da    PI: 7.179
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400009991genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.63.7e-2279138357
                           --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
              Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                           +R+++t+eql++Leel+++ +r+psae++++++++l    +++ ++V++WFqN++a+e++
  PGSC0003DMP400009991  79 SRWNPTPEQLQTLEELYRRgTRTPSAEQIQHITAQLrrygKIEGKNVFYWFQNHKARERQ 138
                           7*****************99**************************************97 PP
2Wus_type_Homeobox115.42.7e-3778140365
     Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                           ++RW+PtpeQ++ Leely++G+rtP++e+iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+
  PGSC0003DMP400009991  78 SSRWNPTPEQLQTLEELYRRGTRTPSAEQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKR 140
                           79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003892.5E-576143IPR001356Homeobox domain
SuperFamilySSF466892.27E-1279143IPR009057Homeodomain-like
PfamPF000466.8E-2079138IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.5E-979138IPR009057Homeodomain-like
CDDcd000862.56E-680140No hitNo description
PROSITE profilePS5007111.25684139IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MWMMGYNDGG DFNMPDSFNG RKLRPLMPRV PHAPTATATN PTNCLRNFHG ENFIALNHHQ  60
LAMSEQNKRD FNTQLVVSSR WNPTPEQLQT LEELYRRGTR TPSAEQIQHI TAQLRRYGKI  120
EGKNVFYWFQ NHKARERQKR RRQLESSANG NGNGGGDDQS HSNCNVENAE RKESGANRTV  180
FEIEQTKHWP SPTNCSTLAE KTAAKTKAAA TAAGATAAGV AESCRVAAAE RWIPFDEGEQ  240
RRTLLAERNA TWQMMHLSCS PPTTTNNTNF ATICSNTNIT TATCTPIIRS CPSTPRTIDH  300
QTKQLFKPKD HLNIFIEPPR CDQKQENIIG DDEEDHGHEA QTLELFPLRS SNDNNDENNF  360
SDKDEIGAAA NLNNNFSGSH YQFFEFLPLK N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400009991
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006341531.10.0PREDICTED: WUSCHEL-related homeobox 1
TrEMBLM1A4950.0M1A495_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000144640.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46812342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.12e-55WUSCHEL related homeobox 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]