PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400009571

Common Name

LOC102584731

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Trihelix

Protein Properties

Length: 345aa MW: 37805.5 Da PI: 9.916

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400009571	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	51.5	2.7e-16	48	132	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 +W++ v +L+ea++ ++ +r+klk+++We+v+k++ +++ ++++qCk+k+e+++kry+ + +++ + s++p++ +l PGSC0003DMP400009571 48 EWSEGAVSCLLEAYEAKWILRNRAKLKGQDWEDVAKHVsarvNSTKSPKTQTQCKNKIESMKKRYRSESATAADA-----SSWPLYPRL 131 5*********************************9987778888999999**************99984.....57**999 PP trihelix 86 e 86 + PGSC0003DMP400009571 132 D 132 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.3E-19	46	132	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MDKEAGNHHH HQNQNHGISN KDEFSPRIKP PQNYHVATGN SDRLKRDEWS EGAVSCLLEA 60 YEAKWILRNR AKLKGQDWED VAKHVSARVN STKSPKTQTQ CKNKIESMKK RYRSESATAA 120 DASSWPLYPR LDLLLRGNNA SAASSSLIPP PLPPAAPPNT NCVIDAVEPT QPPIVLPPPP 180 PPLPPSPALP IGNGDQNSHG SNGLDRGIKQ EDILMDAKLS DNAAAADHKN ATATNSSSTP 240 ALYSDNKSKS KLRSKNKRKR AVEGWEIGES IRLLAEVVVR SEQARMETMR DIERMRAEAE 300 AKRGEMDLKR TEIIANTQLE IAKLFASITK GSVDSSLRIG RSSS*

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MDKEAGNHHH HQNQNHGISN KDEFSPRIKP PQNYHVATGN SDRLKRDEWS EGAVSCLLEA  60
YEAKWILRNR AKLKGQDWED VAKHVSARVN STKSPKTQTQ CKNKIESMKK RYRSESATAA  120
DASSWPLYPR LDLLLRGNNA SAASSSLIPP PLPPAAPPNT NCVIDAVEPT QPPIVLPPPP  180
PPLPPSPALP IGNGDQNSHG SNGLDRGIKQ EDILMDAKLS DNAAAADHKN ATATNSSSTP  240
ALYSDNKSKS KLRSKNKRKR AVEGWEIGES IRLLAEVVVR SEQARMETMR DIERMRAEAE  300
AKRGEMDLKR TEIIANTQLE IAKLFASITK GSVDSSLRIG RSSS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400009571

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006347663.1	0.0	PREDICTED: trihelix transcription factor ASIL2 isoform X1
TrEMBL	M1A3D7	0.0	M1A3D7_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400013829	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12251	16	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	2e-90	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400009571
Entrez Gene	102584731

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474]