PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400009538
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 386aa    MW: 43943.1 Da    PI: 6.5026
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400009538genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.51.5e-10203228227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           kt++C  +  tG+C++ drC+F+Hg+
  PGSC0003DMP400009538 203 KTKICIKWETTGQCPFRDRCHFSHGK 228
                           89**********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.8E-1169105IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-770103IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.9817299IPR000571Zinc finger, CCCH-type
SMARTSM003567.17298IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-6126154IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.826126154IPR000571Zinc finger, CCCH-type
SMARTSM003560.68126153IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-5128152IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-8199232IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.563201229IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-12202232IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-5203228IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-6203228IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MPFAGGEIGG VWPNSPMNHD MFESYCQFEH APSFKRMTDS DRNLLNCATF PAIKSRMNSP  60
NIQESKGTSH IFYKTHMCIK CLKETCKNEE NCTFAHGVED LREPPLNWQD LICVKDRELN  120
EDQVKMHRMK ICKIFYDGEE CPYGYKCKFL HERPSKIKSN IARDREISAI SIKTTRNISD  180
PRMIETSKHE NDIVHIEMPI YCKTKICIKW ETTGQCPFRD RCHFSHGKSE LHEPILTNFV  240
PITPSPFSVP LGSNTVVNAS NNSSEKNPVI RNFNMEPEAP QAPVDPLDDQ ITHTKLRADF  300
QVIAQAMIAQ ANHEVIALVK SNEEIMVTRA GDFKRMNSLR FQMDEDPQDF VEGIQNIVGN  360
IGLTLVENVD LAAYQLKGVS QVLFN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400009538
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345349.11e-170PREDICTED: zinc finger CCCH domain-containing protein 39-like
TrEMBLM1A3C20.0M1A3C2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000137740.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA65532434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.13e-46C3H family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]