PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400009532
Common NameLOC102581324
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 273aa    MW: 31224.2 Da    PI: 7.2819
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400009532genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.64.6e-08151198455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR +iN+++  L++++P +     k +  a +L + ++Y++sLq
  PGSC0003DMP400009532 151 SHSLAERVRRGKINERLGCLQDIVPGC----YKSMGMAVMLDEIINYVQSLQ 198
                           8*************************8....3569999***********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.85E-16145215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.33E-9145202No hitNo description
Gene3DG3DSA:4.10.280.103.1E-15147209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.869147197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-5151198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-8153203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MAFHYFNPDM QIIIPQFSLL NTDTNLNFHN QFPEQNYLNT TSLEMSNFNF HKHSDEHIFN  60
QIPEFPIGLI ENFQQDMFNL SVPARNDINE SKKRKTIETP ESSSAYSSPA VSSRRKTSKG  120
RGKRVKSDDN EEEKLRQVVH VRAKRGQATD SHSLAERVRR GKINERLGCL QDIVPGCYKS  180
MGMAVMLDEI INYVQSLQNQ VEFLSMKLSA ASTYYDFNSE TDILETMQRA KAYETHMMQK  240
LKKEGCEGVG SNQVAPLIDH TFGCYPKLSY NT*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400009532
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755241e-139HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006353818.20.0PREDICTED: transcription factor BEE 1-like
SwissprotQ8GWK71e-59BEE3_ARATH; Transcription factor BEE 3
TrEMBLM1A3B80.0M1A3B8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000137660.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39712344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.19e-61BR enhanced expression 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]