PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400008768
Common NameLOC102602414
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 267aa    MW: 30464.9 Da    PI: 7.8375
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400008768genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.13.1e-18122176256
                           T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           rk+ ++tkeq ++Le+ F+++ +++ +++++LA++l+L  rqV vWFqNrRa+ k
  PGSC0003DMP400008768 122 RKKLRLTKEQSDVLEDSFKEHTTLNSKQKRDLARRLSLRPRQVEVWFQNRRARTK 176
                           788899***********************************************98 PP
2HD-ZIP_I/II119.61.6e-38122212192
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           +kk+rl+keq+ +LE+sF+e+++L++++K +lar+L l+prqv+vWFqnrRARtk+kq+E+d+e L+++y+ lk+en+rL+ke +eL+ 
  PGSC0003DMP400008768 122 RKKLRLTKEQSDVLEDSFKEHTTLNSKQKRDLARRLSLRPRQVEVWFQNRRARTKLKQTEVDCEILRKCYEDLKDENRRLNKEIQELK- 209
                           69*************************************************************************************9. PP

           HD-ZIP_I/II  90 elk 92 
                           +lk
  PGSC0003DMP400008768 210 SLK 212
                           555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.3E-18109176IPR009057Homeodomain-like
SuperFamilySSF466896.27E-18114179IPR009057Homeodomain-like
PROSITE profilePS5007117.232118178IPR001356Homeobox domain
SMARTSM003895.5E-16120182IPR001356Homeobox domain
PfamPF000461.2E-15122176IPR001356Homeobox domain
CDDcd000863.71E-14122179No hitNo description
PROSITE patternPS000270153176IPR017970Homeobox, conserved site
PfamPF021833.9E-10178212IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.6E-17178221IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MMCNTRLSLS LGLSSSPPHQ NNNEEKLSTN DDNQEKLTLC LSTSSEFTNN YDNNRINPQL  60
LGGVNSSVSS FSNTSSVKRE RDASSFEEEV ENLETKRVLL ISPKGLVDHN DDDEDVHDYG  120
TRKKLRLTKE QSDVLEDSFK EHTTLNSKQK RDLARRLSLR PRQVEVWFQN RRARTKLKQT  180
EVDCEILRKC YEDLKDENRR LNKEIQELKS LKKSQSFRVQ LSAATLSMCP SCERTYGGAA  240
TDNSTKISFS IGDQKPHFYG IPSQIH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120126TRKKLRL
2170178RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400008768
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755161e-158HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356814.10.0PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466041e-61HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLM1A1J30.0M1A1J3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000126150.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-56HD-ZIP family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  4. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]