PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400008751 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 380aa MW: 41183.8 Da PI: 6.6034 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.5 | 3.1e-10 | 225 | 273 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L+el+P + +k Ka +L + ++Y++sLq PGSC0003DMP400008751 225 NSHSLAERVRRERISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 273 58**************************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.97E-17 | 220 | 290 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.93E-11 | 220 | 277 | No hit | No description |
PROSITE profile | PS50888 | 15.472 | 222 | 272 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-16 | 222 | 290 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.7E-7 | 225 | 273 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.1E-10 | 228 | 278 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MGTKETGSFN CPSTGMNRAD SMPNVDPFSG SGWDPLLSLN QKGGFKGSSV VGHNEFVNLP 60 YQSSQFAHYP SDSNLAEMVP KIPAFGNESY SELVNTFPLQ EQLRGANCYA NYVKNRGIST 120 EGECQISGEG AVEVSPNGKR KISENHSLSN ANKNVEGELQ KAPSRDSSDC SKEQDGGKRH 180 KTDQNVSSNL RSKQAGKQVK DDSDGGEPPK DSYVHVRAKR GQATNSHSLA ERVRRERISE 240 RMRLLQELVP GCNKITGKAV MLDEIINYVQ SLQQQVEFLS MKLATVNPEL NFDIDRILSK 300 EMLHQQTSNA ALLGLGPGLS SSLPFPGISH GSFAGIPGTT PPFHPLPQNV WDNELQSLLQ 360 MGFDSTSSMN NMGPNGTAP* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00135 | DAP | Transfer from AT1G10120 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400008751 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006356834.1 | 0.0 | PREDICTED: transcription factor bHLH74 | ||||
Refseq | XP_015168609.1 | 0.0 | PREDICTED: transcription factor bHLH74 | ||||
Refseq | XP_015168610.1 | 0.0 | PREDICTED: transcription factor bHLH74 | ||||
Refseq | XP_015168611.1 | 0.0 | PREDICTED: transcription factor bHLH74 | ||||
TrEMBL | M1A1H6 | 0.0 | M1A1H6_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400012591 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10120.1 | 7e-63 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400008751 |
Publications ? help Back to Top | |||
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