PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400008750
Common NameLOC102580436
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 383aa    MW: 41627.4 Da    PI: 6.7913
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400008750genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.53.2e-10225273355
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +h+ +Er RR+ri +++  L+el+P +    +k   Ka +L + ++Y++sLq
  PGSC0003DMP400008750 225 NSHSLAERVRRERISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 273
                           58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.96E-11220277No hitNo description
SuperFamilySSF474595.1E-17220290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.472222272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-16222290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-7225273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-10228278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MGTKETGSFN CPSTGMNRAD SMPNVDPFSG SGWDPLLSLN QKGGFKGSSV VGHNEFVNLP  60
YQSSQFAHYP SDSNLAEMVP KIPAFGNESY SELVNTFPLQ EQLRGANCYA NYVKNRGIST  120
EGECQISGEG AVEVSPNGKR KISENHSLSN ANKNVEGELQ KAPSRDSSDC SKEQDGGKRH  180
KTDQNVSSNL RSKQAGKQVK DDSDGGEPPK DSYVHVRAKR GQATNSHSLA ERVRRERISE  240
RMRLLQELVP GCNKITGKAV MLDEIINYVQ SLQQQVEFLS MKLATVNPEL NFDIDRILSK  300
EMLHQQTSNA ALLGLGPGLS SSLPFPGISH GSFAGIPGTT PPFHPLPQNV WDNELQSLLQ  360
MGFDSTSSMN NMGPNGRSKL DL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400008750
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356834.10.0PREDICTED: transcription factor bHLH74
RefseqXP_015168609.10.0PREDICTED: transcription factor bHLH74
RefseqXP_015168610.10.0PREDICTED: transcription factor bHLH74
RefseqXP_015168611.10.0PREDICTED: transcription factor bHLH74
TrEMBLM1A1H50.0M1A1H5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000125910.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52502435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.12e-64bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]