PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400008358
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HB-other
Protein Properties Length: 482aa    MW: 54200.8 Da    PI: 7.3095
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400008358genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.31.2e-084293257
                          HHHHHCTS-HHHHHHHHHHHHHHHHC CS
              Homeobox 32 eLAkklgLterqVkvWFqNrRakekk 57
                          e A++lgLte+qV+ WF+ rR k+k+
  PGSC0003DMP400008358  4 EVAQSLGLTEKQVSGWFCHRRLKDKR 29
                          78**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000862.01E-5129No hitNo description
PROSITE profilePS5007111.272130IPR001356Homeobox domain
SuperFamilySSF466891.2E-6235IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-7229IPR009057Homeodomain-like
PfamPF000463.7E-6429IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MKLEVAQSLG LTEKQVSGWF CHRRLKDKRL LSRETNAKGR QDRSSGVIQD RGSGFRQDSC  60
GSTKQGDDKY FDHREVESRR LTGPEVSAAD VTREVDTMYR AESNLMEDTP SGSSSSLRDA  120
RFSKNVESFD MATSKYLPGN EPTDLKYVKP RTGPSGYLKV KAKVENASIT AVKRQLGSVY  180
RQDGPLLGVV FDLLPRGAFE SSVQTPVDDP EYAGKPVPYL TPDFTKVDKQ SNSCIRYGSI  240
SKTNSHGSDL DGANFKKSNK SGHPEYYINQ KPGRNSSMHN GDRYYLERNS SIEMRKGSGR  300
EVAVDGRCNY KLMSKHDGAE IKTSPGSSGG FRSSYSAKVN REQVTPRFTS RNCVSLEIAE  360
EEDLECKPSN FFQKGSKHHY CPERELPSKV EKDYIHVDRP TVDEDYNEDY NEDRVKIPWE  420
NEMRAAKRAR DDEAPNHQED VRKASVTRMP SQTNHQIRSA AEMSSSFSED DKAEETSSFE  480
D*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400008358
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006349800.10.0PREDICTED: uncharacterized protein LOC102600158
TrEMBLM1A0J50.0M1A0J5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000120080.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.12e-48HB-other family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]