PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400007968 | ||||||||
Common Name | LOC102583067 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 210aa MW: 24555.7 Da PI: 6.801 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.2 | 7.7e-20 | 52 | 104 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++++eq++ Le+ F ++++ e++ +LA++lgL+ rqV+vWFqNrRa++k PGSC0003DMP400007968 52 KRKLSDEQVNLLEQSFGHEHKLESERKDKLASELGLDPRQVTVWFQNRRARWK 104 45899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 117.5 | 7.6e-38 | 51 | 141 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kr+ls+eqv+lLE+sF +e+kLe+erK +la+eLgl+prqv vWFqnrRAR+k+k+lE++y++Lk+++++ +++rLe+ev +L+e+ PGSC0003DMP400007968 51 RKRKLSDEQVNLLEQSFGHEHKLESERKDKLASELGLDPRQVTVWFQNRRARWKSKKLEEEYSKLKNEHETNIVDKCRLENEVLKLKEQ 139 8**************************************************************************************99 PP HD-ZIP_I/II 91 lk 92 + PGSC0003DMP400007968 140 MC 141 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.811 | 46 | 106 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.0E-20 | 49 | 110 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.01E-18 | 52 | 115 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 6.0E-17 | 52 | 104 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-20 | 53 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.69E-16 | 55 | 107 | No hit | No description |
PRINTS | PR00031 | 9.3E-6 | 77 | 86 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 81 | 104 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 9.3E-6 | 86 | 102 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MNNDDQMLHI SQYYSGIYTQ QLTQQGEGKP KRRRKKNKGD DVNGAMMMMM RKRKLSDEQV 60 NLLEQSFGHE HKLESERKDK LASELGLDPR QVTVWFQNRR ARWKSKKLEE EYSKLKNEHE 120 TNIVDKCRLE NEVLKLKEQM CEAEKEIQRL LTERSDGVSI NSPTTSSLSM EAAMDPPFLG 180 EFGFDNSFYG PSHEGLEWVN NLYNMPYHM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 29 | 36 | PKRRRKKN |
2 | 33 | 53 | RKKNKGDDVNGAMMMMMRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400007968 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 1e-129 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006346933.1 | 1e-156 | PREDICTED: homeobox-leucine zipper protein ATHB-40-like | ||||
Swissprot | Q9ZU70 | 6e-69 | ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21 | ||||
TrEMBL | M0ZZL2 | 1e-155 | M0ZZL2_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400011464 | 1e-156 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1289 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18550.1 | 3e-56 | homeobox protein 21 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400007968 |
Entrez Gene | 102583067 |
Publications ? help Back to Top | |||
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