PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400007938
Common NameLOC102589994
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Trihelix
Protein Properties Length: 321aa    MW: 37376.6 Da    PI: 9.5352
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400007938genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix64.72.1e-2053135286
              trihelix   2 WtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                           W++qe+++ i++r e+e +++++k    k+lWe v++++ erg++rs++qCk+kw+ l +ryk  ++++ ++      ++pyfd+l+
  PGSC0003DMP400007938  53 WSNQETRDFIAIRGELEIEFSSAKrsNLKNLWEIVAARINERGYRRSAEQCKSKWKTLINRYKGKETSDPDN----GGQFPYFDELH 135
                           *********************86522669************************************9999984....4469*****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.81745111IPR017877Myb-like domain
SMARTSM007170.002949113IPR001005SANT/Myb domain
PfamPF138371.4E-2052137No hitNo description
Gene3DG3DSA:1.10.10.609.4E-452113IPR009057Homeodomain-like
CDDcd122031.66E-1853118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MFGGNNENLG PFTQRLMLPQ HPLHLLPGAG GSSGSGLGGD DEFPKRDERV PPWSNQETRD  60
FIAIRGELEI EFSSAKRSNL KNLWEIVAAR INERGYRRSA EQCKSKWKTL INRYKGKETS  120
DPDNGGQFPY FDELHALFSS NMNNNVQRVQ LESEARKRPR GTSRDRSSEE ISEDEGYAYE  180
SDEVKLARSN VAPKKKTEKV KRPRTSNAEK ASRQANFGSI NNNTGRAVDN IQEMLKEFFQ  240
HQLRIEMQWR ETTEKRARER EVFEQEWRSS MEKLERDRMM IEQSWREREE QRRTREETRA  300
EKRDALLTTL LNKLIGENHP *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154160ARKRPRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400007938
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006367770.10.0PREDICTED: trihelix transcription factor GT-3b-like
TrEMBLM0ZZI80.0M0ZZI8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000114080.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA101331923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.11e-32Trihelix family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]