PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400007089
Common NameLOC102606215
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 495aa    MW: 56290.9 Da    PI: 4.8704
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400007089genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS271.72.3e-831124793373
                  GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgd....pmqRlaayfteALaar.larsvselykalppsetseknsseelaalklfse 86 
                           +lLl  Aea+++++l la+ ++ rl+++ s++ +    p++Rla yft+AL  + l++s++el ++ + + +s  + +++++a+++++e
  PGSC0003DMP400007089 112 DLLLMGAEAIEARNLDLASIVVLRLNTILSNQENrensPVERLALYFTQALLCKtLNNSSHELLNQNQNQYQS--EFTSSMTAFQMLQE 198
                           789999*********************97766654566************97651555666676655555444..588889999***** PP

                  GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvp 175
                           +sP++kf+h+taNqaIlea++g+e+vHi+Dfdi++G+QWp+L+  L +R +   slRiT ++s +++++  +++tg+rL++fA+++++p
  PGSC0003DMP400007089 199 ISPYVKFAHFTANQAILEATKGSEQVHILDFDIMEGIQWPPLMVDLVERGNTNSSLRITSLVS-DHSNSCHVQKTGKRLQEFANSINLP 286
                           ***************************************************************.667999******************* PP

                  GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnsesFlerflea 260
                           f f+ ++ ++le++   +  v+ + +l+ n++++  +++++  sl +   ++ + +++lsPk+vv+ve+e    ++ +s sF+e f+ea
  PGSC0003DMP400007089 287 FMFDQILLEDLEKI---QVVVEGHNNLIANVMIHQLHMPQRGSSLVK---TFFNGLRKLSPKLVVLVEEElfnlSKISSMSFVEFFCEA 369
                           *****955555555...788899**********99999988888888...********************8776666999********* PP

                  GRAS 261 leyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvksd 347
                           l++y++++ds+  +++     + +++E+e+l+ +i + + +  ++    +   ekW++ l +  GF++ p+s++++ qak+l++ ++  
  PGSC0003DMP400007089 370 LHHYTTIYDSILGGFGGGYmLALRVIEKEFLRVRILDSLRQFPSD----KLGREKWSKGLYSlKGFRQSPMSSSNVRQAKHLVSLFS-G 453
                           ***********777777666999******************9999....556678***987658***********************.8 PP

                  GRAS 348 gyrveeesgslvlgWkdrpLvsvSaW 373
                           gy v++e++ l l+Wk+rpL+s+S W
  PGSC0003DMP400007089 454 GYWVQNEQNKLALCWKSRPLTSASIW 479
                           9************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.24184461IPR005202Transcription factor GRAS
PfamPF035148.0E-81112479IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MECENFQPNY INPYIEYSNL ETTFSWNNPS IINPQCSIQD FVTIVNDVDI LDYFQNDFDF  60
IDGDVDIPLQ NTQQEIIQGD TELSREGQKS RVCNPRLEFL QDQLMEETSV TDLLLMGAEA  120
IEARNLDLAS IVVLRLNTIL SNQENRENSP VERLALYFTQ ALLCKTLNNS SHELLNQNQN  180
QYQSEFTSSM TAFQMLQEIS PYVKFAHFTA NQAILEATKG SEQVHILDFD IMEGIQWPPL  240
MVDLVERGNT NSSLRITSLV SDHSNSCHVQ KTGKRLQEFA NSINLPFMFD QILLEDLEKI  300
QVVVEGHNNL IANVMIHQLH MPQRGSSLVK TFFNGLRKLS PKLVVLVEEE LFNLSKISSM  360
SFVEFFCEAL HHYTTIYDSI LGGFGGGYML ALRVIEKEFL RVRILDSLRQ FPSDKLGREK  420
WSKGLYSLKG FRQSPMSSSN VRQAKHLVSL FSGGYWVQNE QNKLALCWKS RPLTSASIWV  480
PVSSSSSPSS SISF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-42944831382Protein SCARECROW
5b3h_A5e-4211848326381Protein SCARECROW
5b3h_D5e-4211848326381Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400007089
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351042.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLM0ZXK60.0M0ZXK6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000101580.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA133661417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.13e-40GRAS family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]