PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400006341 | ||||||||
Common Name | LOC102580907 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 348aa MW: 40036.7 Da PI: 4.7719 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 178.2 | 2.3e-55 | 8 | 137 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 +ppGfrFhPtdeelv +yL+kk++++k++l +vi+++d+y++ePwdL+ k ++e++ewyfFs++dkky+tg+r+nrat +g+Wkat PGSC0003DMP400006341 8 VPPGFRFHPTDEELVGYYLRKKIASQKIDL-DVIRDIDLYRIEPWDLQdKcrIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKAT 95 69****************************.9***************943432233667****************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 g+dk+v++ k++l+g++ktLvfykgrap+g+k+dW+mheyrle PGSC0003DMP400006341 96 GRDKAVYN-KSKLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 137 ********.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-60 | 5 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.585 | 8 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-28 | 9 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0048759 | Biological Process | xylem vessel member cell differentiation | ||||
GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis | ||||
GO:1990110 | Biological Process | callus formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MDTNESCVPP GFRFHPTDEE LVGYYLRKKI ASQKIDLDVI RDIDLYRIEP WDLQDKCRIG 60 YEEQNEWYFF SHKDKKYPTG TRTNRATMAG FWKATGRDKA VYNKSKLIGM RKTLVFYKGR 120 APNGQKSDWI MHEYRLESEE NGPPQEEGWV VCRAFKKKIT GQTKTNNMVE GWESNYFYDE 180 ATTTVSSIVD PLEYITRQPP LLSNNFNMLQ NNLLCKQETS MEAAENNLNF SYTNSDQFIQ 240 LPQLESPSLP LLKRPISSMS LVSDYNNNNN HEEDGSKNVT ADWRALDKFV ASQLSHEETT 300 LYEDDQHNCS DLGMLLLLSD RGEGPKLNEI LSSSSEDCDI GVCLFDK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-50 | 8 | 162 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-50 | 8 | 162 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-50 | 8 | 162 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-50 | 8 | 162 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-50 | 8 | 162 | 17 | 170 | NAC domain-containing protein 19 |
4dul_B | 1e-50 | 8 | 162 | 17 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00266 | DAP | Transfer from AT2G18060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400006341 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006340711.1 | 0.0 | PREDICTED: NAC domain-containing protein 37 | ||||
Swissprot | Q9SL41 | 1e-156 | NAC37_ARATH; NAC domain-containing protein 37 | ||||
TrEMBL | M0ZVN6 | 0.0 | M0ZVN6_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400009136 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA134 | 24 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18060.1 | 1e-146 | vascular related NAC-domain protein 1 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400006341 |
Entrez Gene | 102580907 |
Publications ? help Back to Top | |||
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