PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400006052
Common NameLOC102585454
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TCP
Protein Properties Length: 372aa    MW: 41177.8 Da    PI: 7.1012
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400006052genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP132.34.4e-41792522137
                   TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg. 88 
                           a+k ++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+ +  + s +ss ++s s+ 
  PGSC0003DMP400006052  79 AKKPTTTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANYSsLNISLRSSRHHSASNy 167
                           78999***********************************************************9999976666666666666555556 PP

                   TCP  89 ....................................kaaksaakskksqksaasalnlakesrakarararertrekmriknkln 137
                                                               + +  +ak++  ++++  + n ++  r k r++ ++  +++  ++n l+
  PGSC0003DMP400006052 168 lahnninnfghvyhdrnyfngvglfssennsffpsgNLNMLQAKEELCDDDDDDNDNNNNTGRIKRRSEDQDLLQNNYPMSNMLQ 252
                           6666666999999999999999999999999999984444444666666666666888899999999998887777777776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.3E-4083242IPR005333Transcription factor, TCP
PROSITE profilePS5136927.63685139IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MENVHHHHDH DNIGNSIQRP NFPLQLLEKR DQVDHSTICS SQVHPYNSTS LHMMTTSSSD  60
APCVDHNQKS KNQDKKQQAK KPTTTKDRHT KVDGRGRRIR MPATCAARVF QLTRELGHKS  120
DGETIEWLLQ QAEPAVIAAT GTGTIPANYS SLNISLRSSR HHSASNYLAH NNINNFGHVY  180
HDRNYFNGVG LFSSENNSFF PSGNLNMLQA KEELCDDDDD DNDNNNNTGR IKRRSEDQDL  240
LQNNYPMSNM LQSSTYGSIP ASHQIGHIPA TTLYMMTNNN NNSSHHDPNN CSMWGSSSNN  300
NNIENSNIRG GLLNFMNFHQ PILGTRGGGG TAAEGQWGML TAAMNSYRQS GGHASGSSNQ  360
HNGGDDHQHH S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400006052
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1492900.0AC149290.1 Solanum demissum chromosome 5 clone PGEC093P17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363220.10.0PREDICTED: transcription factor TCP15-like
TrEMBLM0ZUZ90.0M0ZUZ9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000087280.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA139471214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.17e-42TCP family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]