PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400005367 | ||||||||
Common Name | LOC102605344 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | YABBY | ||||||||
Protein Properties | Length: 179aa MW: 20141.8 Da PI: 9.2748 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 228 | 2.4e-70 | 10 | 172 | 4 | 170 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesa 92 ssse++Cy+qCnfCntil+vsvP + ++++vtvrCGhC++++svn+ q+l+ ++ ++l+ ++ + +++++n+k + ++++s+ PGSC0003DMP400005367 10 SSSSERLCYLQCNFCNTILVVSVPCSNMLTLVTVRCGHCANMFSVNIGSLIQALPLQDV--QKLQRQQYTNVENNSSNYKAYGSSSSSS 96 6899****************************************************996..6677777888888888888888887777 PP YABBY 93 stsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s++ + ++ s + e pr+pp i+PPekrqrvPsaynrfikeeiqrika+nP+ishreafs+aaknWahfP+ihfgl PGSC0003DMP400005367 97 SSKFNRYS-SIVSPEFEPRIPP-IHPPEKRQRVPSAYNRFIKEEIQRIKATNPEISHREAFSTAAKNWAHFPHIHFGL 172 77776655.7777788899999.9****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.4E-71 | 12 | 172 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 6.55E-8 | 117 | 165 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 5.9E-5 | 121 | 166 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MSFDMTFSSS SSSERLCYLQ CNFCNTILVV SVPCSNMLTL VTVRCGHCAN MFSVNIGSLI 60 QALPLQDVQK LQRQQYTNVE NNSSNYKAYG SSSSSSSSKF NRYSSIVSPE FEPRIPPIHP 120 PEKRQRVPSA YNRFIKEEIQ RIKATNPEIS HREAFSTAAK NWAHFPHIHF GLKLEGNK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400005367 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU557674 | 0.0 | EU557674.1 Solanum lycopersicum FAS protein (fasciated) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006340315.1 | 1e-130 | PREDICTED: putative axial regulator YABBY 2 | ||||
Swissprot | Q9XFB0 | 3e-66 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | M0ZTF6 | 1e-129 | M0ZTF6_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400007731 | 1e-130 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 4e-63 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400005367 |
Entrez Gene | 102605344 |
Publications ? help Back to Top | |||
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