PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400005200 | ||||||||
Common Name | LOC102597616 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | YABBY | ||||||||
Protein Properties | Length: 195aa MW: 22097.9 Da PI: 8.0961 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 192.7 | 1.7e-59 | 9 | 160 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesas 93 ++seq+Cy+ CnfCn +l+vsvP + l+ +vtvrCGhCt+l svn+a a + + ++h ++ l+++ ++ +++ + k ++ s PGSC0003DMP400005200 9 TNSEQLCYIPCNFCNIVLVVSVPCSNLLDIVTVRCGHCTNLWSVNMAAAFHSNSWQNH-----HPYLHHQVGNYTNS-PHDQYKIDCGS 91 579************************************************9999998.....44454444433332.23333444444 PP YABBY 94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +s+++ n+++e v+rPPekrqr Psayn+fikeeiqrika+nPdi+hreafs+aaknWahfP+i fgl PGSC0003DMP400005200 92 SSITN-----NSTHEER---IVNRPPEKRQRGPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNWAHFPHIQFGL 160 44444.....3333322...379****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 5.6E-67 | 10 | 160 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 3.4E-8 | 103 | 154 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.2E-4 | 108 | 154 | IPR009071 | High mobility group box domain |
CDD | cd00084 | 2.20E-4 | 114 | 150 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MSSSYIDSTN SEQLCYIPCN FCNIVLVVSV PCSNLLDIVT VRCGHCTNLW SVNMAAAFHS 60 NSWQNHHPYL HHQVGNYTNS PHDQYKIDCG SSSITNNSTH EERIVNRPPE KRQRGPSAYN 120 QFIKEEIQRI KANNPDITHR EAFSTAAKNW AHFPHIQFGL MLETDNQAKL GASENKEKLI 180 MHRAALPKIK TFTF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400005200 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ667743 | 1e-75 | KJ667743.1 Solanum melongena YAB5 protein mRNA, complete cds. | |||
GenBank | KJ667744 | 1e-75 | KJ667744.1 Solanum sisymbriifolium YAB5 protein mRNA, complete cds. | |||
GenBank | KJ667745 | 1e-75 | KJ667745.1 Solanum aethiopicum YAB5 protein mRNA, complete cds. | |||
GenBank | KJ667746 | 1e-75 | KJ667746.1 Solanum virginianum YAB5 protein mRNA, complete cds. | |||
GenBank | KJ667747 | 1e-75 | KJ667747.1 Solanum torvum YAB5 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006345225.1 | 1e-146 | PREDICTED: axial regulator YABBY 5-like | ||||
Swissprot | Q8GW46 | 9e-77 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | M0ZT20 | 1e-145 | M0ZT20_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400007474 | 1e-145 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 4e-79 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400005200 |
Entrez Gene | 102597616 |
Publications ? help Back to Top | |||
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