PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400005199 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | YABBY | ||||||||
Protein Properties | Length: 173aa MW: 19660.1 Da PI: 9.2522 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 161.6 | 6.3e-50 | 6 | 138 | 24 | 170 |
YABBY 24 vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprv 112 vsvP + l+ +vtvrCGhCt+l svn+a a + + ++h ++ l+++ ++ +++ + k ++ s+s+++ n+++e PGSC0003DMP400005199 6 VSVPCSNLLDIVTVRCGHCTNLWSVNMAAAFHSNSWQNH-----HPYLHHQVGNYTNS-PHDQYKIDCGSSSITN-----NSTHEER-- 81 9*******************************9999998.....44454444433332.2333344444444444.....3333322.. PP YABBY 113 ppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 v+rPPekrqr Psayn+fikeeiqrika+nPdi+hreafs+aaknWahfP+i fgl PGSC0003DMP400005199 82 -IVNRPPEKRQRGPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNWAHFPHIQFGL 138 .379****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.6E-55 | 5 | 138 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.75E-8 | 81 | 132 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.8E-4 | 86 | 132 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MNTNKVSVPC SNLLDIVTVR CGHCTNLWSV NMAAAFHSNS WQNHHPYLHH QVGNYTNSPH 60 DQYKIDCGSS SITNNSTHEE RIVNRPPEKR QRGPSAYNQF IKEEIQRIKA NNPDITHREA 120 FSTAAKNWAH FPHIQFGLML ETDNQAKLGA SENKEKLIMH RAALPKIKTF TF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400005199 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ667743 | 9e-76 | KJ667743.1 Solanum melongena YAB5 protein mRNA, complete cds. | |||
GenBank | KJ667744 | 9e-76 | KJ667744.1 Solanum sisymbriifolium YAB5 protein mRNA, complete cds. | |||
GenBank | KJ667745 | 9e-76 | KJ667745.1 Solanum aethiopicum YAB5 protein mRNA, complete cds. | |||
GenBank | KJ667746 | 9e-76 | KJ667746.1 Solanum virginianum YAB5 protein mRNA, complete cds. | |||
GenBank | KJ667747 | 9e-76 | KJ667747.1 Solanum torvum YAB5 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006345225.1 | 1e-125 | PREDICTED: axial regulator YABBY 5-like | ||||
Swissprot | Q8GW46 | 8e-64 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | M0ZT19 | 1e-127 | M0ZT19_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400007474 | 1e-124 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 3e-66 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400005199 |
Publications ? help Back to Top | |||
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