PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400005129
Common NameLOC102598460
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 297aa    MW: 34282.9 Da    PI: 4.8598
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400005129genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.42.1e-1780133356
                           --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           k++++ ++q+e Le+ Fe ++++  e++ +LAk++gL+ rqV +WFqNrRa+ k
  PGSC0003DMP400005129  80 KKRRLLPKQVEFLEKSFEVENKLEPERKVQLAKETGLQPRQVAIWFQNRRARCK 133
                           45577899********************************************99 PP
2HD-ZIP_I/II1192.5e-3879170192
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           ekkrrl  +qv++LE+sFe e+kLeperKv+la+e glqprqva+WFqnrRAR ktkqlEk+y++Lk+++d+lk++ + L ke+e+Lr+
  PGSC0003DMP400005129  79 EKKRRLLPKQVEFLEKSFEVENKLEPERKVQLAKETGLQPRQVAIWFQNRRARCKTKQLEKNYDVLKASFDKLKTQYDCLFKENESLRN 167
                           69**************************************************************************************9 PP

           HD-ZIP_I/II  90 elk 92 
                           e++
  PGSC0003DMP400005129 168 EVH 170
                           986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.74E-1866137IPR009057Homeodomain-like
PROSITE profilePS5007116.5275135IPR001356Homeobox domain
SMARTSM003894.8E-1878139IPR001356Homeobox domain
PfamPF000461.1E-1480133IPR001356Homeobox domain
CDDcd000861.66E-1680136No hitNo description
Gene3DG3DSA:1.10.10.603.1E-1983142IPR009057Homeodomain-like
PRINTSPR000313.6E-5106115IPR000047Helix-turn-helix motif
PROSITE patternPS000270110133IPR017970Homeobox, conserved site
PRINTSPR000313.6E-5115131IPR000047Helix-turn-helix motif
PfamPF021833.3E-16135176IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEVARVYEGS NNCFIPPNEI LPPTSNWVSN SSSIFHGSVS MVNFDQDQVQ KSKMRSFLVQ  60
LDQDDNNSND DNYNYHQSEK KRRLLPKQVE FLEKSFEVEN KLEPERKVQL AKETGLQPRQ  120
VAIWFQNRRA RCKTKQLEKN YDVLKASFDK LKTQYDCLFK ENESLRNEVH LLKDKLINSV  180
KGKETSEPIN PLDHVEPQNP SIGVASNLAM VVCKQEDTKS DVLDSDSPRF TDGDYTSFLE  240
PADSSNVFQT EHSDFSQEND TLCFPKLEED HHHDDLPVNS CHLGFQIEDQ SWFSHY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127135RRARCKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400005129
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-174HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006344287.10.0PREDICTED: homeobox-leucine zipper protein HAT5-like
TrEMBLM0ZSV70.0M0ZSV7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000073760.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.15e-43homeobox 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]