PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400004805
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HSF
Protein Properties Length: 481aa    MW: 52913.2 Da    PI: 4.5347
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400004805genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.31.4e-34681602103
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k+++++ed+ l+++isw +ng+sfvv+d+ ef++ vLp+ Fkhsnf+SFvRQLn+YgF+k++ ++         weF+++ F +gk
  PGSC0003DMP400004805  68 FLSKTFDLVEDPLLDSIISWGRNGDSFVVWDPVEFSRLVLPRNFKHSNFSSFVRQLNTYGFRKIDADR---------WEFANEGFLRGK 147
                           9****************************************************************999.........************ PP

                           XXXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkkse 103
                           ++ll++i+r+ks+
  PGSC0003DMP400004805 148 RHLLKNIQRRKSH 160
                           **********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.32E-3463157IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-5664157IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.3E-3664157IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.5E-176891IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-3068157IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.5E-17106118IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340107131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.5E-17119131IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MDSEFAAFSP ISLPFADPSS PFINFGSFAT PLSQQPVGEG GEIEQLAEEG MGVPHPMECL  60
HGIQIPPFLS KTFDLVEDPL LDSIISWGRN GDSFVVWDPV EFSRLVLPRN FKHSNFSSFV  120
RQLNTYGFRK IDADRWEFAN EGFLRGKRHL LKNIQRRKSH QAGSSSGSSA EAGKGTMDEI  180
EKLRNEKSLM MQEVVELQQQ QRGTVQQMES VNEKLQAAEQ RQKQMVSFLA KVLQNPTFLA  240
RVRQMKEQGE ITCPRTMRKF VKYQPHGPDG VGSSSMEGQI VKVRSDFQDL AACFESPDFN  300
PVVDQQLPET GLGAEAMPFE GGTVASEELT VAHELFNCSD REIGGASFFN PEGSHFKGKN  360
VASLQLEVMP EYFASFPEEM GKEKNISGFS SPAIGSMVKD EELWSMGFEA SAGMPSAGTE  420
LWDSLSSYVP DFGVSSGLSD LWDIDPLQAA GSSGVDKWPA DGSPFGQSES HANQPKNDSF  480
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-236515717120Heat shock factor protein 1
5d5u_B5e-236515726129Heat shock factor protein 1
5d5v_B5e-236515726129Heat shock factor protein 1
5d5v_D5e-236515726129Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400004805
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2085440.0AF208544.1 Lycopersicon peruvianum heat stress transcription factor A3 (HSFA3) mRNA, complete cds.
GenBankGU1203600.0GU120360.1 Solanum lycopersicum heat stress transcription factor A3 (HSFA3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015161517.10.0PREDICTED: heat stress transcription factor A-3
TrEMBLM0ZS620.0M0ZS62_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000069170.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.12e-82heat shock transcription factor A3
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]