PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400004801
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HSF
Protein Properties Length: 498aa    MW: 54774.4 Da    PI: 4.5096
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400004801genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind96.42.9e-30681772103
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT........XTTSEEEE CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks........kekiweFk 82 
                           Fl+k+++++ed+ l+++isw +ng+sfvv+d+ ef++ vLp+ Fkhsnf+SFvRQLn+Y  + +  +e    +        + + weF+
  PGSC0003DMP400004801  68 FLSKTFDLVEDPLLDSIISWGRNGDSFVVWDPVEFSRLVLPRNFKHSNFSSFVRQLNTYVVSTIFVSELLLGNfiqgfrkiDADRWEFA 156
                           9***********************************************************99998888776667777665449****** PP

                           ESXXXXXXXXXXXXXXXXXXX CS
          HSF_DNA-bind  83 hksFkkgkkellekikrkkse 103
                           ++ F +gk++ll++i+r+ks+
  PGSC0003DMP400004801 157 NEGFLRGKRHLLKNIQRRKSH 177
                           ******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.18E-3163174IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.9E-4764174IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.2E-3364174IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.1E-2768174IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-126891IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-12106118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-12119131IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MDSEFAAFSP ISLPFADPSS PFINFGSFAT PLSQQPVGEG GEIEQLAEEG MGVPHPMECL  60
HGIQIPPFLS KTFDLVEDPL LDSIISWGRN GDSFVVWDPV EFSRLVLPRN FKHSNFSSFV  120
RQLNTYVVST IFVSELLLGN FIQGFRKIDA DRWEFANEGF LRGKRHLLKN IQRRKSHQAG  180
SSSGSSAEAG KGTMDEIEKL RNEKSLMMQE VVELQQQQRG TVQQMESVNE KLQAAEQRQK  240
QMVSFLAKVL QNPTFLARVR QMKEQGEITC PRTMRKFVKY QPHGPDGVGS SSMEGQIVKV  300
RSDFQDLAAC FESPDFNPVV DQQLPETGLG AEAMPFEGGT VASEELTVAH ELFNCSDREI  360
GGASFFNPEG SHFKGKNVAS LQLEVMPEYF ASFPEEMGKE KNISGFSSPA IGSMVKDEEL  420
WSMGFEASAG MPSAGTELWD SLSSYVPDFG VSSGLSDLWD IDPLQAAGSS GVDKWPADGS  480
PFGQSESHAN QPKNDSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-206517426129Heat shock factor protein 1
5d5v_B4e-206517426129Heat shock factor protein 1
5d5v_D4e-206517426129Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400004801
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015161517.10.0PREDICTED: heat stress transcription factor A-3
TrEMBLM0ZS570.0M0ZS57_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000069170.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87272025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.14e-78heat shock transcription factor A3
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]