PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400004266
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 765aa    MW: 85045.2 Da    PI: 5.0482
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400004266genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.56.1e-203388156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                          +++ +++t  q++e+e+lF+++++p+ ++r +L++ lgL+ rqVk+WFqNrR+++k
  PGSC0003DMP400004266 33 KKRYHRHTVRQIQEMEALFKECPHPDDKQRLKLSQDLGLKPRQVKFWFQNRRTQMK 88
                          688899***********************************************998 PP
2START154.87.1e-492294561206
                           HHHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT- CS
                 START   1 elaeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddke...qWd 73 
                           ela++ ++elvk+ ++++p+W + s ++ g+evl  +e s+               ++ea r s+vv+m++ +lv  +ld+++    + 
  PGSC0003DMP400004266 229 ELALSSMDELVKMCTSSDPLWIRAS-NDSGKEVLNVEEYSRMfpwpvgvkhngneLKIEATRSSAVVIMNSITLVDAFLDTNKcieLFP 316
                           578999*******************.77777777777776667788889*********************************9999999 PP

                           TT-SEEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEE CS
                 START  74 etlakaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgili 154
                             + +a+t++v++sg      g lqlm++e+q+l+plv+ R+ +f+Ry++q  ++g+w+ivd  +ds  ++   +++   +++pSg++i
  PGSC0003DMP400004266 317 SIISRAKTIQVVTSGvsghasGSLQLMFMEMQVLTPLVStRECYFLRYCQQnVEEGSWAIVDFPLDSLHNNF-PPPFPYFKRRPSGCII 404
                           9999***********************************************99***********99988877.57777777******** PP

                           EEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                 START 155 epksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                           ++++ng+s+vtwveh++++++ + ++++++v sg+a+ga++w++ lqrqce+
  PGSC0003DMP400004266 405 QDMPNGYSRVTWVEHAEVEENPVNQIFNHFVTSGVAFGAQRWLSILQRQCER 456
                           **************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.9E-201988IPR009057Homeodomain-like
SuperFamilySSF466892.88E-182291IPR009057Homeodomain-like
PROSITE profilePS5007116.6653090IPR001356Homeobox domain
SMARTSM003896.3E-193194IPR001356Homeobox domain
CDDcd000868.35E-183391No hitNo description
PfamPF000461.9E-173388IPR001356Homeobox domain
PROSITE patternPS0002706588IPR017970Homeobox, conserved site
PROSITE profilePS5084841.217220459IPR002913START domain
SuperFamilySSF559611.79E-33221458No hitNo description
CDDcd088753.52E-112224455No hitNo description
PfamPF018527.4E-41229456IPR002913START domain
SMARTSM002341.6E-31229456IPR002913START domain
SuperFamilySSF559611.65E-18483652No hitNo description
SuperFamilySSF559611.65E-18689729No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 765 aa     Download sequence    Send to blast
MDSGSGSEHI EGMSGNELEP EQQQQQQQQA GKKKRYHRHT VRQIQEMEAL FKECPHPDDK  60
QRLKLSQDLG LKPRQVKFWF QNRRTQMKAQ QDRSDNVILR AENDNLKNEN YRLQAALRSI  120
MCPTCGGPAM LGEMGYDEQQ LRLENARLKE EFERVCCLVS QYNGRGPPNP LLPPSLELDM  180
SINNFSSKFE DQPNCVDMVP VPLLMPDQNN TQFSGGPMIL EEEKSLAMEL ALSSMDELVK  240
MCTSSDPLWI RASNDSGKEV LNVEEYSRMF PWPVGVKHNG NELKIEATRS SAVVIMNSIT  300
LVDAFLDTNK CIELFPSIIS RAKTIQVVTS GVSGHASGSL QLMFMEMQVL TPLVSTRECY  360
FLRYCQQNVE EGSWAIVDFP LDSLHNNFPP PFPYFKRRPS GCIIQDMPNG YSRVTWVEHA  420
EVEENPVNQI FNHFVTSGVA FGAQRWLSIL QRQCERLASL MARNISDLGV IPSPEARKSL  480
MNLAQRMIKT FCMNISTCCG QSWTALSDSP DDTVRITTRK VTEPGQPNGL ILSAVSTSWL  540
PYNHFQVFDL LRDERRRAQL DVLSNGNSLH EVAHIANGSH PGNCISLLRI NVASNSSQSV  600
ELMLQESCTD DSGSLVVYTT VDVDAIQLAM NGEDPSCIPL LPLGFVITPI NNGQANINNC  660
DNNVSGIEAN SSQSSEKRQN LSSIQEYSGG CLLTVGLQVL ASTIPSAKLN LSSVTAINHH  720
LCNTVQQINA ALVAFYPDIE ITAPSSPPPQ QPESSKQVDE NSNS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400004266
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0095930.0AP009593.1 Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0018O15, complete sequence.
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352911.10.0PREDICTED: homeobox-leucine zipper protein HDG5 isoform X1
RefseqXP_015166603.10.0PREDICTED: homeobox-leucine zipper protein HDG5 isoform X1
RefseqXP_015166604.10.0PREDICTED: homeobox-leucine zipper protein HDG5 isoform X2
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
SwissprotQ336P20.0ROC3_ORYSJ; Homeobox-leucine zipper protein ROC3
TrEMBLM0ZQX40.0M0ZQX4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000061550.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90202226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]