PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400003825
Common NameLOC102584447
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 693aa    MW: 76515.9 Da    PI: 8.299
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400003825genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.94.2e-07594642247
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                            +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  PGSC0003DMP400003825 594 RPFSVFEVEALVQAVEKLGTGRWRDVKMRAFdnaKHRTYVDLKDKWKTL 642
                           56777799*****************9776668**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542366.02E-10393485IPR029071Ubiquitin-related domain
PROSITE profilePS500538.851399469IPR000626Ubiquitin domain
PROSITE profilePS5129413.527588647IPR017930Myb domain
SMARTSM007173.5E-6592645IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-10593643IPR009057Homeodomain-like
SuperFamilySSF466893.79E-15594675IPR009057Homeodomain-like
CDDcd116608.54E-17594644No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MELHKRLDYG FIGYQVPHIP RATRSARGRG NIRKKSDSNE MCAFDLLTTV AGKLLLEGES  60
TSKSSGKDQS AVLKDTTETV KEDEDTPLKE NRCNEQCQER GFFISQIVSE APVVNHCLSK  120
STDTLSGPAS VITSSDCSEK LGSAELFING ERKTENRNCS TKVEHELSGC GDFSSCTLGT  180
ESKKQVKINL SNDAAITTNK RAAVCSSEFP DPWDRKRSML VASDNTVKLS LSTDPDPFGS  240
FPVIRNDVQL ANKDDDEKSC GCTQPSTRNM AFRPAPHVGD WRMRKLQASK YWEVNPQSDD  300
EGHVNVDNET RHVYQKRENV YTSERSQRDF PFKKRKLYYC NSFSNSDGGS SDGICSSPTK  360
DLNRDASGYS LASSGACAAA GTSIPKAASA SFRSNDSHVK LKIKSFRVPE LFVEIPENAT  420
VGSLKRTVME AVTAILGGGL RIGVVFQGKK VRDDSKTLFQ AGISHDDKLD ALGFTLEPSP  480
SRASPPLGPE GRSPVLPCET PQPLTRCSPG STIIHNGMQQ ETYNAFPDYS GTNLSNFIES  540
DHDSAPSPPD ASLEKNAADS RALVPVAAMD AEALAVVPMR KPKRCETVQR RIRRPFSVFE  600
VEALVQAVEK LGTGRWRDVK MRAFDNAKHR TYVDLKDKWK TLVHTARISP QQRRGEPVPQ  660
ELLDRVLIAH AYWSQQQARQ QMKHQSETRL LL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A6e-545806834107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1326335QRDFPFKKRK
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400003825
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006358691.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X2
SwissprotQ6R0E31e-137TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLM0ZPY10.0M0ZPY1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000054760.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30762348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-149TRF-like 2
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]