PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PGSC0003DMP400003766 | ||||||||
Common Name | LOC102585208 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 200aa MW: 22460.5 Da PI: 6.3867 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.3 | 0.00012 | 33 | 55 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H PGSC0003DMP400003766 33 YSCTFCRREFRSAQALGGHMNVH 55 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.74E-6 | 30 | 60 | No hit | No description |
PROSITE profile | PS50157 | 11.011 | 33 | 60 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 35 | 55 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 200 aa Download sequence Send to blast |
MWNPKDADDS WEVRAFEEDT GNSMGATWPP RFYSCTFCRR EFRSAQALGG HMNVHRSDRV 60 RLNQTPSHAS NSSTINFPNV NSTLLIQNQE FIQNGGLCFL YSMPNYHNPN HTTIKSSNVD 120 PSNILSNISP FLTNNLMSPC TIPSSNFQPH NISSSSFNTS EHSASNSTSN DNNRDKRDST 180 IEDEIDLELR LGWRSATPR* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 5e-12 | 28 | 55 | 2 | 29 | superman protein |
2l1o_A | 5e-12 | 28 | 55 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PGSC0003DMP400003766 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006361200.1 | 1e-146 | PREDICTED: transcriptional regulator SUPERMAN-like | ||||
TrEMBL | M0ZPS8 | 1e-144 | M0ZPS8_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400005376 | 1e-145 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5953 | 21 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G17810.1 | 2e-33 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | PGSC0003DMP400003766 |
Entrez Gene | 102585208 |
Publications ? help Back to Top | |||
---|---|---|---|
|