PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400003216
Common NameLOC102587947
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 149aa    MW: 16467.8 Da    PI: 4.8299
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400003216genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.95.5e-11421241598
                           -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE- CS
                    B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfr 98 
                            ++lpkk ++e  +  ++ +  +  +   ++W++ +   + ++++ ++  W++Fv++n+LkegD +vF+l   + s+ +++v+++r
  PGSC0003DMP400003216  42 SMYLPKKMTSELPSAGARAVSAV-LTCGQKKWDMFY--GGVKSGHKFSIEWRKFVDDNNLKEGDGLVFELLeCSaSKIHFRVQILR 124
                           68999999999854434444444.45577*******..777777777777*******************66355566666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.22E-1524124IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-1425124IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.57428126IPR003340B3 DNA binding domain
CDDcd100171.96E-1231124No hitNo description
SMARTSM010195.6E-432126IPR003340B3 DNA binding domain
PfamPF023626.0E-942123IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MKQPEIESSG IPEIDNGEYW PLSGKPYVDL ILTKTGVKPI YSMYLPKKMT SELPSAGARA  60
VSAVLTCGQK KWDMFYGGVK SGHKFSIEWR KFVDDNNLKE GDGLVFELLE CSASKIHFRV  120
QILRGDFPAE LNPEDEEGAN SDNPILLG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400003216
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-150HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755131e-150HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006354559.11e-107PREDICTED: B3 domain-containing protein Os06g0112300-like isoform X2
RefseqXP_006359110.11e-107PREDICTED: B3 domain-containing protein Os06g0112300-like isoform X2
RefseqXP_015169776.11e-107PREDICTED: B3 domain-containing protein Os06g0112300-like isoform X1
TrEMBLM0ZNK41e-106M0ZNK4_SOLTU; Uncharacterized protein
TrEMBLM1BVU21e-106M1BVU2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000045231e-106(Solanum tuberosum)
STRINGPGSC0003DMT4000540931e-106(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-10B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]