PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400002887
Common NameLOC102583791
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 335aa    MW: 37302.6 Da    PI: 6.8029
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400002887genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309.3e-1058107154
                           CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           r++ +  rE+ RRdr+N+ f eL + l +      +K++Ka+iL  +v+ +k+L
  PGSC0003DMP400002887  58 RKVQKADREKLRRDRLNEQFLELGKTLDPE----RPKNDKASILSDTVQMLKDL 107
                           5677889******************99886....69****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.48457107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-1157129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-758107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.63E-658112No hitNo description
SuperFamilySSF474596.94E-1358123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-663113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MDQLNHGGLY QPNQLPNHCL TELNQLPSDV SMPPNGLHSE SSSKQKPEAE LKDSIAARKV  60
QKADREKLRR DRLNEQFLEL GKTLDPERPK NDKASILSDT VQMLKDLTAQ VSRLKSEYAA  120
LTDESRELTQ EKNDLREEKA SLKSDIESLN VQYQQRMRTM YPWAGMDHSM VMHPPSYPYP  180
MPVPVPTGPV PMHPSLQPYP FFGNHNPAVV PNPSSFVQYM TPNTLIEQQP TQYMSPIIQP  240
GSMTRQESRN KSSDQGESRI EKSEDSNEVA TDLELKTPGS TSEQDLSSGQ KKSRKLPRKD  300
NSLTDGSSSS KCSSSHSVHA VSSNSVVRGT KTGD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400002887
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2408540.0AC240854.5 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-25n22 map 1, complete sequence.
GenBankAC2408590.0AC240859.6 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-138h16 map 1, complete sequence.
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006359649.10.0PREDICTED: transcription factor bHLH121 isoform X1
SwissprotQ9LT233e-89BH121_ARATH; Transcription factor bHLH121
TrEMBLM0ZMS40.0M0ZMS4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000040390.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54562434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.11e-82bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  3. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]