PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400002886
Common NameLOC102583791
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 334aa    MW: 37215.5 Da    PI: 6.8029
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400002886genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309.3e-1057106154
                           CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           r++ +  rE+ RRdr+N+ f eL + l +      +K++Ka+iL  +v+ +k+L
  PGSC0003DMP400002886  57 RKVQKADREKLRRDRLNEQFLELGKTLDPE----RPKNDKASILSDTVQMLKDL 106
                           5677889******************99886....69****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.4E-1156128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.48456106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-1357122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-757106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.67E-657111No hitNo description
SMARTSM003531.4E-662112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDQLNHGGLY QPNQLPNHCL TELNQLPSDV SMPPNGLHSE SSKQKPEAEL KDSIAARKVQ  60
KADREKLRRD RLNEQFLELG KTLDPERPKN DKASILSDTV QMLKDLTAQV SRLKSEYAAL  120
TDESRELTQE KNDLREEKAS LKSDIESLNV QYQQRMRTMY PWAGMDHSMV MHPPSYPYPM  180
PVPVPTGPVP MHPSLQPYPF FGNHNPAVVP NPSSFVQYMT PNTLIEQQPT QYMSPIIQPG  240
SMTRQESRNK SSDQGESRIE KSEDSNEVAT DLELKTPGST SEQDLSSGQK KSRKLPRKDN  300
SLTDGSSSSK CSSSHSVHAV SSNSVVRGTK TGD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400002886
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2408540.0AC240854.5 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-25n22 map 1, complete sequence.
GenBankAC2408590.0AC240859.6 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-138h16 map 1, complete sequence.
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006359650.10.0PREDICTED: transcription factor bHLH121 isoform X2
SwissprotQ9LT233e-89BH121_ARATH; Transcription factor bHLH121
TrEMBLM0ZMS30.0M0ZMS3_SOLTU; Uncharacterized protein
STRINGSolyc01g111130.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.11e-82bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  3. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]