PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400002397 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 258aa MW: 29291.8 Da PI: 8.5324 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 108.8 | 6.3e-34 | 2 | 75 | 54 | 128 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +ekewyfF+ rdkky+tg+r+nrat++gyWkatgkdke+++ +++ vg+kktLvfykgrap+gekt+Wvmheyrl PGSC0003DMP400002397 2 GEKEWYFFCMRDKKYPTGQRTNRATEAGYWKATGKDKEIFK-SKTFVGMKKTLVFYKGRAPRGEKTNWVMHEYRL 75 579**************************************.8999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 40.572 | 1 | 100 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.79E-38 | 2 | 101 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-16 | 6 | 75 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MGEKEWYFFC MRDKKYPTGQ RTNRATEAGY WKATGKDKEI FKSKTFVGMK KTLVFYKGRA 60 PRGEKTNWVM HEYRLDGKYS IHNLPKTAKN ECVICRIFKK NSGGKKIAIS NLTRSGSLTD 120 NSRSSNLPPL MDMSPYNNNT QITTTARSSG ETCNSHVTCF SDSVEDQKPQ TYDHYHAPLS 180 SSPVSVDFPS NVPNESMAYM ENFQYGDSGL MQDNSIMRLL IDNNYGSESK QSLRGYEDHD 240 FNITSTGPVD IDCLWNY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-32 | 1 | 106 | 68 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-32 | 1 | 106 | 68 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-32 | 1 | 106 | 68 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-32 | 1 | 106 | 68 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-32 | 1 | 106 | 71 | 174 | NAC domain-containing protein 19 |
3swm_B | 6e-32 | 1 | 106 | 71 | 174 | NAC domain-containing protein 19 |
3swm_C | 6e-32 | 1 | 106 | 71 | 174 | NAC domain-containing protein 19 |
3swm_D | 6e-32 | 1 | 106 | 71 | 174 | NAC domain-containing protein 19 |
3swp_A | 6e-32 | 1 | 106 | 71 | 174 | NAC domain-containing protein 19 |
3swp_B | 6e-32 | 1 | 106 | 71 | 174 | NAC domain-containing protein 19 |
3swp_C | 6e-32 | 1 | 106 | 71 | 174 | NAC domain-containing protein 19 |
3swp_D | 6e-32 | 1 | 106 | 71 | 174 | NAC domain-containing protein 19 |
4dul_A | 6e-32 | 1 | 106 | 68 | 171 | NAC domain-containing protein 19 |
4dul_B | 6e-32 | 1 | 106 | 68 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400002397 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT740994 | 0.0 | KT740994.1 Solanum lycopersicum NAC2-domain containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006338435.1 | 0.0 | PREDICTED: NAC domain-containing protein 92 | ||||
Swissprot | Q9FLJ2 | 2e-83 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | M0ZLJ4 | 0.0 | M0ZLJ4_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400003380 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-85 | NAC domain containing protein 100 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400002397 |
Publications ? help Back to Top | |||
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