PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400002220

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NAC

Protein Properties

Length: 283aa MW: 33009.1 Da PI: 7.263

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400002220	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	158.2	3.5e-49	19	144	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 pGfrFhPtdeelv +yL++kve+k++++ e ik++diyk++PwdLpk v e+ke+y+F+ r +ky+++ r+nr+tksg+Wkatg dk PGSC0003DMP400002220 19 LPGFRFHPTDEELVGFYLRRKVENKRINM-ELIKHIDIYKYDPWDLPKLV--EDKEMYYFCMRGRKYKNSVRPNRVTKSGFWKATGIDK 104 69*************************.99***********655..789****************************** PP NAM 91 evlskkgel..vglkktLvfykgrapkgektdWvmheyrl 128 +v+s++++ +glkk Lv+y+g+a kg+ktdW+mhe+rl PGSC0003DMP400002220 105 PVYSSTTQCiiIGLKKCLVYYRGSAGKGTKTDWMMHEFRL 144 74443559************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.45E-54	13	165	IPR003441	NAC domain
PROSITE profile	PS51005	51.807	18	165	IPR003441	NAC domain
Pfam	PF02365	1.4E-24	20	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005992	Biological Process	trehalose biosynthetic process
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006561	Biological Process	proline biosynthetic process
GO:0009718	Biological Process	anthocyanin-containing compound biosynthetic process
GO:0010120	Biological Process	camalexin biosynthetic process
GO:0042538	Biological Process	hyperosmotic salinity response
GO:1900056	Biological Process	negative regulation of leaf senescence
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MADEIKTMSK EGNEEDVILP GFRFHPTDEE LVGFYLRRKV ENKRINMELI KHIDIYKYDP 60 WDLPKLVEDK EMYYFCMRGR KYKNSVRPNR VTKSGFWKAT GIDKPVYSST TQCIIIGLKK 120 CLVYYRGSAG KGTKTDWMMH EFRLPPTSNT NHQAEVWTLC RIFKRSTSTY KRSSYSTQEV 180 KHLLGDASSK ACSMESDENS TDHDHSNSFK DISFQQQNYN NYEAQMDEIR NQQNLISHDS 240 TFPSSSSISF WNTYSTQEEY LFGDHGNKWD DLKSIVDLAT MM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-47	18	171	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-47	18	171	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-47	18	171	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-47	18	171	17	171	NO APICAL MERISTEM PROTEIN
4dul_A	1e-47	18	171	17	171	NAC domain-containing protein 19
4dul_B	1e-47	18	171	17	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00310	DAP	Transfer from AT2G43000	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400002220

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	1e-168	HG975444.1 Solanum pennellii chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015159594.1	0.0	PREDICTED: transcription factor JUNGBRUNNEN 1-like
Swissprot	Q9SK55	2e-89	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	M0ZL44	0.0	M0ZL44_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400003082	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1697	24	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	4e-86	NAC domain containing protein 42

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400002220

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]