PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400002142 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 599aa MW: 65258.6 Da PI: 6.1594 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39 | 1.4e-12 | 425 | 470 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L PGSC0003DMP400002142 425 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAIAYINEL 470 799***********************6.....5***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 9.5E-56 | 9 | 198 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.111 | 421 | 470 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.79E-18 | 424 | 494 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.65E-14 | 424 | 475 | No hit | No description |
Pfam | PF00010 | 4.9E-10 | 425 | 470 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-18 | 425 | 491 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-16 | 427 | 476 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 599 aa Download sequence Send to blast |
MPFFNQESLQ QRLQALIDGA RESWAYAIFW QSSSTSDFAT PSVLGWGDGY YKGEENKNKR 60 RASSSSANFV AEQEHRKKVL RELNSLISGV QAAGAGSGGD DAVDEEVTDT EWFFLISMTQ 120 SFANGNGLPG LAMYSSSPIW VTGTEKLAGS QCERARQAQG FGLQTIVCIP SANGVVELGS 180 TELIFESSDL MNKVKYLFNF NIDMGSVTGS GSGSCAVHPE TDPSALWLTD PSSSVVEAKD 240 SLINSSSRDV QLVFVNENSE NGTQNQQHSQ QTQGFFTKEL NFSGYGFDGS STRNKNGNSS 300 ISCKPETREI LNFGDSSKRS GSLFSGQSQF GPGTGLGLME ENKNKNNNNN KKRSLASRGN 360 NEEGMLSFVS GVILPTSTMG KSGGGGDSDH SDLEASVVKE AIVEPEKKPR KRGRKPANGR 420 EEPLNHVEAE RQRREKLNQR FYALRAVVPN VSKMDKASLL GDAIAYINEL KSKVQNSDLD 480 KEELRSQIES LRKELANKGS SNYSSSPPSN QDLKIVDMDI DVKVIGWDAM IRIQCSKKNH 540 PAARLMAALK DLDLDVHHAS VSVVNDLMIQ QATVKMGSRL YAQEQLTIAL TSKFAESR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 6e-69 | 2 | 201 | 2 | 195 | Transcription factor MYC3 |
4rqw_B | 6e-69 | 2 | 201 | 2 | 195 | Transcription factor MYC3 |
4rs9_A | 6e-69 | 2 | 201 | 2 | 195 | Transcription factor MYC3 |
4yz6_A | 6e-69 | 2 | 201 | 2 | 195 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 406 | 414 | KKPRKRGRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds to the G-box motif (5'-AACGTG-3') found in a number of promoters of jasmonate-induced genes (PubMed:15231736). Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:30518626). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). Acts synergistically with EOT1 in the transactivation of TPS5 (PubMed:24884371). Involved in type VI glandular trichome development (PubMed:30518626). Involved in the activation of terpene synthases required for volatile mono- and sesquiterpenes synthesis by the glandular cells of type VI trichomes (PubMed:30518626). {ECO:0000269|PubMed:15231736, ECO:0000269|PubMed:24884371, ECO:0000269|PubMed:30518626}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400002142 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by methyl jasmonate and wounding. {ECO:0000269|PubMed:15231736}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ630506 | 0.0 | AJ630506.1 Solanum tuberosum partial mRNA for MYC transcription factor (jamyc10 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006366244.1 | 0.0 | PREDICTED: transcription factor MYC4-like | ||||
Swissprot | A0A060KY90 | 0.0 | MYC1_SOLLC; Transcription factor MYC1 | ||||
TrEMBL | M0ZKY6 | 0.0 | M0ZKY6_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400002963 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3300 | 24 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32640.1 | 1e-164 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400002142 |
Publications ? help Back to Top | |||
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