PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400001214 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C3H | ||||||||
Protein Properties | Length: 225aa MW: 24991.8 Da PI: 8.61 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.4 | 6e-09 | 48 | 70 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +++C +f++ G+C yG+rC++ H PGSC0003DMP400001214 48 RSICTRFQKWGYCTYGERCRYVH 70 689******************** PP | |||||||
2 | zf-CCCH | 34.2 | 4.2e-11 | 134 | 159 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+++ r G C +G++C+FaHg+ PGSC0003DMP400001214 134 KTRLCNRWERDGSCFFGAKCQFAHGR 159 9***********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.967 | 45 | 73 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0061 | 47 | 72 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-6 | 48 | 72 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-6 | 48 | 70 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.7E-6 | 49 | 71 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.23E-8 | 131 | 159 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-11 | 132 | 159 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.1E-5 | 132 | 159 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.018 | 132 | 160 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.1E-8 | 134 | 159 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MSSLVNNSEI SSKCDEYSDK KCGSNFNVEC VLKKPTETNS RMAQEGNRSI CTRFQKWGYC 60 TYGERCRYVH TTGGSTYGPL QGGGYDQSYV EEGKSEYRES AAITIVTGGD EVKNKSYSDN 120 VEPKRFVDFR TRMKTRLCNR WERDGSCFFG AKCQFAHGRA GIFAFIALQG YGSSNPLVSS 180 SNAGISAPTK NVAPNEIGSS APAERRFKWN DVRKISQVYG DWIE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400001214 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015069378.1 | 1e-143 | zinc finger CCCH domain-containing protein 56-like | ||||
TrEMBL | M0ZIU1 | 1e-166 | M0ZIU1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400001628 | 1e-167 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13026 | 13 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 7e-17 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400001214 |
Publications ? help Back to Top | |||
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