PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400001203

Common Name

LOC102589520

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

TCP

Protein Properties

Length: 303aa MW: 31927.2 Da PI: 6.4161

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400001203	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	84.6	2.4e-26	1	109	24	89
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....................... 88 ++a+caar+F+L++eLG+++d++tieWLlqqa+p+++++tgt++++a+++ + s +ss+s+ s + PGSC0003DMP400001203 1 MPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTsLNISLRSSGSSMSVPsqlrssyfnpnfslsqrrglfpp 89 9**********************************************999877777777775555556666677777777777778888 PP TCP 89 ...................k 89 + PGSC0003DMP400001203 90 giglstdtsattllnfqsaN 109 88776655555555553320 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.9E-30	1	156	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	20.381	1	39	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MPALCAARVF QLTRELGHKS DGETIEWLLQ QAEPSVIAAT GTGTIPANFT SLNISLRSSG 60 SSMSVPSQLR SSYFNPNFSL SQRRGLFPPG IGLSTDTSAT TLLNFQSANL SPNMQLQTKP 120 ELRDNSIDLT ESSPAEDNLS RKRRSDLDLE QQQHQQQQQM GSYLLQSSTG PMPTGHSSIP 180 ANFWMVTNPI PSNQVMGGDP IWPFQSVSNS GAAAALYRGT MPSGLQFMNF PTPVALLPSQ 240 QLGGGSSGGG GNNGLGEGQL GMFAGLNPYR GGGGVSESQA SGSHSHHGGG TDDRHDTTSH 300 HS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	144	SRKRRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269\|PubMed:17953649, ECO:0000269\|PubMed:21668538, ECO:0000269\|PubMed:22155632, ECO:0000269\|PubMed:22267487, ECO:0000269\|PubMed:24689742, ECO:0000269\|PubMed:25655823, ECO:0000269\|PubMed:25757472, ECO:0000269\|PubMed:28132837}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400001203

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269\|PubMed:17953649}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	0.0	HG975442.1 Solanum pennellii chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006364185.1	0.0	PREDICTED: transcription factor TCP14
Swissprot	Q93Z00	6e-42	TCP14_ARATH; Transcription factor TCP14
TrEMBL	M0ZIS9	0.0	M0ZIS9_SOLTU; Uncharacterized protein
TrEMBL	M0ZIT0	0.0	M0ZIT0_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400001613	0.0	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47620.1	3e-37	TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400001203
Entrez Gene	102589520

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Steiner E, et al. The Putative O-Linked N-Acetylglucosamine Transferase SPINDLY Inhibits Class I TCP Proteolysis to Promote Sensitivity to Cytokinin. Plant Physiol., 2016. 171(2): p. 1485-94 [PMID:27208284] Yang L, et al. Pseudomonas syringae Type III Effector HopBB1 Promotes Host Transcriptional Repressor Degradation to Regulate Phytohormone Responses and Virulence. Cell Host Microbe, 2017. 21(2): p. 156-168 [PMID:28132837] Zhang N, et al. MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis. Plant J., 2018. 93(1): p. 66-78 [PMID:29086441] Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]