PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400000947 | ||||||||
Common Name | LOC102595800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | MYB | ||||||||
Protein Properties | Length: 208aa MW: 24004.5 Da PI: 8.7295 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56 | 9.4e-18 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l+++++ +G g W++ ar g++Rt+k+c++rw++yl PGSC0003DMP400000947 15 KGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.5 | 2.6e-17 | 68 | 111 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++ PGSC0003DMP400000947 68 RGNITPEEQLLIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNFWRT 111 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-23 | 8 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.77 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.01E-30 | 13 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-12 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-16 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.04E-9 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 25.316 | 63 | 117 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-25 | 66 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.4E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-16 | 68 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.43E-11 | 72 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0080086 | Biological Process | stamen filament development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MDKRTCDSQD VEVRKGPWTM EEDLILINYI ANHGEGVWNS LARSAGLKRT GKSCRLRWLN 60 YLRPDVRRGN ITPEEQLLIM ELHAKWGNRW SKIAKHLPGR TDNEIKNFWR TRIQKHIKQA 120 ENMNRISSNI SEHNNIQQAS TSQTSTSLAD SIETYSGNNN NNNNNNNNNN NNNNMGTTFH 180 HQGNFPNENI WSMEDLWSMQ LLNDANN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-25 | 12 | 117 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400000947 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215353 | 1e-136 | AC215353.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0011A02, complete sequence. | |||
GenBank | AC215853 | 1e-136 | AC215853.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0031A13, complete sequence. | |||
GenBank | HG975514 | 1e-136 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006338574.1 | 1e-150 | PREDICTED: myb-related protein 340-like | ||||
Swissprot | P81396 | 3e-94 | MYB40_ANTMA; Myb-related protein 340 | ||||
TrEMBL | M0ZI77 | 1e-149 | M0ZI77_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400001278 | 1e-150 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27810.1 | 1e-79 | myb domain protein 21 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400000947 |
Entrez Gene | 102595800 |
Publications ? help Back to Top | |||
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