PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400000872
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Dof
Protein Properties Length: 255aa    MW: 27704.3 Da    PI: 7.3824
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400000872genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof48.51.9e-1543713462
                zf-Dof 34 kaCrryWtkGGalrnvPvGggrrknkkss 62
                          ++CrryWt+GGalrnvPvGgg+r+nk+++
  PGSC0003DMP400000872 43 QNCRRYWTRGGALRNVPVGGGCRRNKRNK 71
                          79************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027013.1E-104369IPR003851Zinc finger, Dof-type
ProDomPD0074788.0E-54362IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MAFSSFPIYL DHHNLHHLQQ QPDHHQQGNP GLDNPLLLPP PTQNCRRYWT RGGALRNVPV  60
GGGCRRNKRN KSSNNNNSAK SGGGGGQVGN TTNNASTSAI PSSCNMEMIG HHFSQSSTQF  120
TSLMGAFQNL NNYGGLIQPP PHQLVGEMGF QIGSNNLLPS LVASNNFEHP TNLYPNFQNE  180
GPTTTTTTIE ASNGVTQQVK MEDNNRQGMD SSTKQFLGTL ENNNQYWGVA NENSWIGFSS  240
DLNNNSPSTT NHLL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400000872
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006348997.21e-144PREDICTED: dof zinc finger protein DOF5.1-like
TrEMBLM0ZI120.0M0ZI12_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000011741e-150(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38000.16e-08DNA binding with one finger 4.7
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]