PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400000822
Common NameLOC102578650
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 319aa    MW: 36179.9 Da    PI: 8.7912
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400000822genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.51.4e-07162184123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           + C++Cgk F+r  nL+ H+r H
  PGSC0003DMP400000822 162 HYCQICGKGFKRDANLRMHMRAH 184
                           68*******************99 PP
2zf-C2H210.90.0015257280123
                           EEETTTT.EEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                           y+C+ C+ k Fs  s+L++H + +
  PGSC0003DMP400000822 257 YVCKRCNkKNFSVLSDLRTHEKHC 280
                           9*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.93E-6161186No hitNo description
SMARTSM003550.0028162184IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.632162189IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.7E-6162188IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280164184IPR007087Zinc finger, C2H2
SMARTSM0035572219252IPR015880Zinc finger, C2H2-like
SMARTSM0035534257279IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MFITPDSQTI IHPPPESISM IIANMGTLIQ EIITTSSSLM FSCQKIVLDS TSLNQNSSRY  60
REPSQNGHGH GQGQVDHLLQ DYNWYEDNYN YNCNTHEDNK NHVTNSSTII ASSTISHDNY  120
GKDFGKRELL LSTSKGKVVT HEENNYDIIE LDASDLLAKY THYCQICGKG FKRDANLRMH  180
MRAHGDEYKS SAALSNPMKR INDSTSEGLL KSSSNTIKYS CPQEGCRWNK KHAKFQPLKS  240
MVCVKNHYKR SHCPKMYVCK RCNKKNFSVL SDLRTHEKHC GDLKWQCSCG TTFSRKDKLM  300
GHVSLFVGHT PLIKESAR*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400000822
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755230.0HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006349041.10.0PREDICTED: zinc finger protein STOP1 homolog
SwissprotQ0WT246e-96STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLM0ZHX70.0M0ZHX7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000011050.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112652225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.13e-89C2H2 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]