PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400000732 | ||||||||
Common Name | LOC102600055 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | B3 | ||||||||
Protein Properties | Length: 231aa MW: 26162.1 Da PI: 10.5499 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37.9 | 3.2e-12 | 123 | 212 | 1 | 81 |
EEEE-..-HHHHT.T-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 f+k+lt+sdv ++ grl l ++++++ +++ ++++ ++ d+ g+ ++ ++ +++ ++y+l + Wk+Fv+++gLke D v PGSC0003DMP400000732 123 FVKQLTNSDVDEHqGRLLLNNEYVRKQllpllnekSEDLTTGISVKTFDPMGKYCNMIFKTWGNHKTYLLLGSWKQFVQEHGLKESDRV 211 99**********9899**************99866333347778888899**999999999**************************88 PP E CS B3 81 v 81 + PGSC0003DMP400000732 212 T 212 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 1.41E-13 | 123 | 226 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.7E-16 | 123 | 216 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.1E-8 | 123 | 212 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.66E-17 | 123 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.432 | 124 | 230 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MVKLEKEDIE AALLLSWLKY VPVEPKIVEK SKRKLRRINK NETPELQISK SVKNSPSASG 60 AGNPKRVRLS SNFNGREAAS SSRNSNPVPK RGRTLPSNLP GSLPKFPPIE NLRTLIGQCS 120 NPFVKQLTNS DVDEHQGRLL LNNEYVRKQL LPLLNEKSED LTTGISVKTF DPMGKYCNMI 180 FKTWGNHKTY LLLGSWKQFV QEHGLKESDR VTGWMFRHSR TGELCFALTW * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400000732 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975524 | 0.0 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006353478.1 | 1e-169 | PREDICTED: B3 domain-containing protein At1g05920-like | ||||
TrEMBL | M0ZHP6 | 1e-168 | M0ZHP6_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400000991 | 1e-169 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6430 | 12 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03170.1 | 1e-27 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400000732 |
Entrez Gene | 102600055 |
Publications ? help Back to Top | |||
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