PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400000692
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 373aa    MW: 42312.2 Da    PI: 6.1153
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400000692genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.43.9e-06132152526
                           --SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                            C+ f++ G C++Gd C +aHg
  PGSC0003DMP400000692 132 ACPEFRK-GNCNRGDGCEYAHG 152
                           7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.1E-4127153IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.718128154IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-4132154IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-4132152IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-4159189IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.625162186IPR000571Zinc finger, CCCH-type
SMARTSM003560.49162185IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061157Biological ProcessmRNA destabilization
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003727Molecular Functionsingle-stranded RNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MIGERSRRIP TIDVPPWPYS DDQTVNMQFM LSPSTNSIST PNNYNYSNFV VEDDYSLFLQ  60
NDAEDIDEFE LENREIELPV DVYACDNFRM YEFKVKRCGR GRSHDWTECP YVHPGEKARR  120
RDPRKFHYSG TACPEFRKGN CNRGDGCEYA HGVFECWLHP GRYRTQPCKD GGNCKRRVCF  180
FAHSPEQLRV LAPGSGSDSP RRYVKALHFV SSPESSSPPT ESPPMSPMTA NSFTSLSRSL  240
GSNSVNEVMA SLRQLQLNRL NSMPSSWNVH MGSPVLGSPR RPIIRPGFYS LPATPSGDPT  300
RPRNRCFDLW ENGECEEEPV MERVESGRDL RVQMFERLSK ENPLDDPVNP NPNCNSGQGP  360
NPDVGWISDL IQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400000692
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755240.0HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006353579.10.0PREDICTED: zinc finger CCCH domain-containing protein 20
SwissprotQ9M0G21e-116C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLM0ZHL70.0M0ZHL7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000009330.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18572158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-101C3H family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  3. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]