PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400000519
Common NameLOC102596484
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 253aa    MW: 28710 Da    PI: 5.7218
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400000519genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.65e-194495556
                          SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                          ++f++eq++ Le++Fe + ++  +++ +LA++lgL+ rqV +WFqN+Ra++k
  PGSC0003DMP400000519 44 RRFSDEQIKSLETMFETETKLEPRKKLQLARELGLQPRQVAIWFQNKRARWK 95
                          48*************************************************9 PP
2HD-ZIP_I/II124.74.3e-4043133393
           HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                            rr+s+eq+k+LE++Fe+e+kLep++K +lareLglqprqva+WFqn+RAR+k+kqlE+dy+ Lk++yd+l+++ e+L+ke+++L  +l
  PGSC0003DMP400000519  43 ARRFSDEQIKSLETMFETETKLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLERDYSILKSNYDNLASQYESLKKEKQSLLIQL 131
                           69***********************************************************************************9999 PP

           HD-ZIP_I/II  92 ke 93 
                           ++
  PGSC0003DMP400000519 132 QK 133
                           86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.67E-182299IPR009057Homeodomain-like
PROSITE profilePS5007116.6983797IPR001356Homeobox domain
SMARTSM003891.5E-1540101IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-1944104IPR009057Homeodomain-like
CDDcd000866.35E-154498No hitNo description
PfamPF000462.1E-164495IPR001356Homeobox domain
PRINTSPR000311.1E-56877IPR000047Helix-turn-helix motif
PROSITE patternPS0002707295IPR017970Homeobox, conserved site
PRINTSPR000311.1E-57793IPR000047Helix-turn-helix motif
PfamPF021838.1E-1797138IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MFDAGEFSPS SSTAALSAEC FSSSSCFSSL SSSKKKKINN NNARRFSDEQ IKSLETMFET  60
ETKLEPRKKL QLARELGLQP RQVAIWFQNK RARWKSKQLE RDYSILKSNY DNLASQYESL  120
KKEKQSLLIQ LQKLNDVMQK ERGKYCCKQE IELDNRCAAI KKNEMEGMPS LSFDLSSQHG  180
TNGVISDDDI DSSIKADYLG LDDDAVHHLL KIVEAGDSSL TSPENWGSLN DDGILNHQPN  240
SSSYDHWWDF WS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400000519
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755131e-173HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339757.10.0PREDICTED: homeobox-leucine zipper protein ATHB-12
SwissprotP468979e-67ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLM0ZH660.0M0ZH66_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000006940.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20412363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61890.12e-61homeobox 12
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]