PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400000489 | ||||||||
Common Name | LOC102585423 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 599aa MW: 66369.9 Da PI: 7.2867 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.5 | 9.9e-13 | 431 | 477 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq PGSC0003DMP400000489 431 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITELQ 477 799***********************66......*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 5.5E-56 | 48 | 236 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.85 | 427 | 476 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.62E-18 | 430 | 492 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.13E-14 | 430 | 481 | No hit | No description |
Pfam | PF00010 | 3.4E-10 | 431 | 477 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.8E-18 | 431 | 491 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-16 | 433 | 482 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 599 aa Download sequence Send to blast |
MVTGNMLWSG EDKATVAAVL GKEAFEYLMS GSVSAECSLM AIGNDQNLQN KLSDLVECPN 60 AANFSWNYAI FWQISRSKSG ELVLGWGDGC CREPKEGEER EVKRIFNLRL DDEGQQRMRK 120 RVLQKLHMLF GGTDEDNYAF GLDRVTDTEM FFLASMYFSF PRGEGGPGKC FGSGKHLWLS 180 DALTSNLEYC ARSFLAKSAG MQTIVLIPTD VGVVELGSVR SIPESLELLQ NIKSCFSSFL 240 SLVRDKQAAG IAVVPEKKEG NNPRLSNSGA VTERTDGNPK LFGHDLNSGT HFREKLAVRK 300 AEERPWENGN RMPFVNARNG LNPASWAQFS NVKPGKPVEL YGPPTPGHNL INGGREEFRL 360 NNFQHQKPAA RMQIDFTGAT SRPIVSPAHT VESEHSDVEV SCKEDRGGPV DEKRPRKRGR 420 KPANGREEPL NHVEAERQRR EKLNQRFYAL RAVVPNISKM DKASLLGDAI AYITELQKKL 480 RDMESERENT SRDAIASEDS PSSEIQIRGP NINIEAANDE VIVRVSCSME THPLSRVIQI 540 FKEAQINVVE SKLSAGNGTV YHTFVLKSSG SEQLTKEKLL AAFSSESNSL RQLSPVGQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 6e-29 | 425 | 487 | 2 | 64 | Transcription factor MYC2 |
5gnj_B | 6e-29 | 425 | 487 | 2 | 64 | Transcription factor MYC2 |
5gnj_E | 6e-29 | 425 | 487 | 2 | 64 | Transcription factor MYC2 |
5gnj_F | 6e-29 | 425 | 487 | 2 | 64 | Transcription factor MYC2 |
5gnj_G | 6e-29 | 425 | 487 | 2 | 64 | Transcription factor MYC2 |
5gnj_I | 6e-29 | 425 | 487 | 2 | 64 | Transcription factor MYC2 |
5gnj_M | 6e-29 | 425 | 487 | 2 | 64 | Transcription factor MYC2 |
5gnj_N | 6e-29 | 425 | 487 | 2 | 64 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 412 | 420 | KRPRKRGRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00100 | PBM | Transfer from AT1G01260 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400000489 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006339721.1 | 0.0 | PREDICTED: transcription factor bHLH13-like | ||||
Swissprot | A0A3Q7ELQ2 | 0.0 | MTB1_SOLLC; Transcription factor MTB1 | ||||
TrEMBL | M0ZH36 | 0.0 | M0ZH36_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400000652 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3585 | 23 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01260.3 | 0.0 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400000489 |
Entrez Gene | 102585423 |
Publications ? help Back to Top | |||
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