PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400000341 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 247aa MW: 29288.2 Da PI: 5.05 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 51.2 | 4e-16 | 16 | 142 | 5 | 128 |
NAM 5 frFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 + F P++++++ +yL + +++l++++ ++ vd+y ePw++ + ++++ yf ++ +k++++ kr +r++ +g+Wk + k+ PGSC0003DMP400000341 16 YNFYPKESDVI-KYLLGFAIDEPLPEQHQfMRLVDLYAEkEPWEILEG--TNTNAGYFITPLKKEKPHHKRFKRIVGKGIWKIQDLAKK 101 68*********.7777777777765545449999*996549****633..345677********************************* PP NAM 92 vlskkgelvglkktLvfy....kgrapkgektdWvmheyrl 128 v++ +g+l+g + + + k++ k +W+m ey+l PGSC0003DMP400000341 102 VFDDRGRLMGYVHHMKYTpdtnKKSIIKELFGEWLMTEYSL 142 ******************543222223334689******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 20.803 | 12 | 167 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.01E-18 | 14 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.1E-7 | 15 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MTAIHHRQRK RYSESYNFYP KESDVIKYLL GFAIDEPLPE QHQFMRLVDL YAEKEPWEIL 60 EGTNTNAGYF ITPLKKEKPH HKRFKRIVGK GIWKIQDLAK KVFDDRGRLM GYVHHMKYTP 120 DTNKKSIIKE LFGEWLMTEY SLDNDYVTNM KKKIIYKDFV ICKIKKKKQR RDHDDKGKDE 180 NIMNDVEVNE LIDSVMEELE EIDDNIEVDV GDDFLAALEN ECMNSEDNEI SKNDANDINL 240 DEFDFF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 150 | 167 | KKKIIYKDFVICKIKKKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400000341 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019068304.1 | 1e-122 | uncharacterized protein LOC101262060 | ||||
TrEMBL | M0ZGR1 | 1e-180 | M0ZGR1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400000450 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1024 | 13 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62380.1 | 3e-07 | NAC-domain protein 101 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400000341 |
Publications ? help Back to Top | |||
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