PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400000151
Common NameLOC102582793
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 144aa    MW: 15995.4 Da    PI: 5.1111
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400000151genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.53.6e-18957149
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          krie+k +r++tf+kRr+g++KK +EL   Cdae+avi fs  g+++ +
  PGSC0003DMP400000151  9 KRIEDKAKRHTTFTKRRQGLFKKTKELVKRCDAEAAVITFSLAGNIFAF 57
                          79****************************************9998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.212161IPR002100Transcription factor, MADS-box
SMARTSM004326.2E-22160IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.46E-23373IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-16323IPR002100Transcription factor, MADS-box
PfamPF003193.9E-181057IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-162338IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-163859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MVRTKVEIKR IEDKAKRHTT FTKRRQGLFK KTKELVKRCD AEAAVITFSL AGNIFAFGHP  60
SVDNVVNRYI AAMSGPELGE VVPVHEEAED AVIGTNEDEE TLGLEVPLDD MGMTELEELD  120
RTMTEMKKKV VDKIDGIISC SKN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400000151
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755131e-113HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339624.11e-101PREDICTED: MADS-box transcription factor 47-like
TrEMBLM0ZG991e-99M0ZG99_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000002101e-100(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.15e-19AGAMOUS-like 61
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]