PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400000076
Common NameLOC102585656
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 310aa    MW: 34478.5 Da    PI: 7.8337
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400000076genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569.2e-181461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          rg+WT+eEde+l++ +++ G g+W++ ++  g+ R++k+c++rw +yl
  PGSC0003DMP400000076 14 RGPWTPEEDEKLIQFINKNGHGSWRSLPKLAGLLRCGKSCRLRWTNYL 61
                          89******************************99************97 PP
2Myb_DNA-binding47.63.9e-1567112148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           rg++++eE++l ++++  lG++ W++Ia+ ++ gRt++++k+ w+++l
  PGSC0003DMP400000076  67 RGPFSPEEQKLVIQLHGILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 112
                           89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.7E-23564IPR009057Homeodomain-like
PROSITE profilePS5129416.844961IPR017930Myb domain
SuperFamilySSF466892.62E-3012108IPR009057Homeodomain-like
SMARTSM007179.0E-141363IPR001005SANT/Myb domain
PfamPF002491.3E-161461IPR001005SANT/Myb domain
CDDcd001679.46E-121661No hitNo description
PROSITE profilePS5129423.51162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2465116IPR009057Homeodomain-like
SMARTSM007171.6E-1366114IPR001005SANT/Myb domain
PfamPF002493.0E-1467112IPR001005SANT/Myb domain
CDDcd001671.30E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGRTPCCDKN GLTRGPWTPE EDEKLIQFIN KNGHGSWRSL PKLAGLLRCG KSCRLRWTNY  60
LRPNIIRGPF SPEEQKLVIQ LHGILGNRWA AIASQLPGRT DNEIKNLWNT HLKKRLLSMG  120
IDPQTHEQYS DPNGLLRRPA TSPSARHLAQ WESARLEAEA RLSRESQFLV PSSVGRSETD  180
YFLRIWNSEI GDSFRKFKKG EKNACQSPAS QASSCTKYGS ASGITTEVEL GVAGSPVTGS  240
NQNEYKEWKI GQPYTEDFLQ GSDTSSSNAM EDSSESALQL LLDFPSNNDM SFLGHGDSYS  300
LYPFLSESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00114ampDAPTransfer from AT3G61250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400000076
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339543.10.0PREDICTED: myb-related protein Zm38-like
SwissprotQ9M2D91e-119MYB17_ARATH; Transcription factor MYB17
TrEMBLM0ZG360.0M0ZG36_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000000940.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-113myb domain protein 17
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]