PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.6751s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 454aa    MW: 50283.1 Da    PI: 8.3402
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.6751s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-19272320355
                     AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             ++GVr+++ +g+WvAeIr p++   r+r++lg+f+taeeAa a++ a+  l+g
  SapurV1A.6751s0010.1.p 272 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAAIAYDTAAYMLRG 320
                             8******9.**********955...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.42E-31270330No hitNo description
SuperFamilySSF541712.16E-22271329IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-31271329IPR001471AP2/ERF domain
PROSITE profilePS5103222.418271328IPR001471AP2/ERF domain
SMARTSM003802.4E-35271334IPR001471AP2/ERF domain
PfamPF008475.1E-13272320IPR001471AP2/ERF domain
PRINTSPR003671.2E-10272283IPR001471AP2/ERF domain
PRINTSPR003671.2E-10294310IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MEEQFPKIET FMHKKLEACS SFHGMATGSK YFGDPDNWGR DGDGKGGMKS PSRSTSERLF  60
SSSESCSSAD DRVSGTNLIG NIPGIGKQGA DKHNHERFFM SGLNSINAHG ANSISDQTIK  120
ESSIPVNFLE SFPTLNNQAH QLPEPPSPSS LSNTSNPPNL TLFLQEPAAA SLLDPSKQVL  180
DPPCKDQRCE PAMSLFPNIS FSMPQLDQIH FQPSNEWFKI NQTLANYSTK GFNDYWLSTT  240
KTQPMKYTGR TPQNHHQKTS FSSASTSPGK LFRGVRQRHW GKWVAEIRLP RNRTRVWLGT  300
FDTAEEAAIA YDTAAYMLRG DYAHLNFPDL KHQLKSNSLN RTTASLLQSK LQAISQGNNI  360
SGDQNKHISD HPPQPSPNKI KVHDSDTKKL KGPSQNTARK ERQFEVGGKT GGEVMENRKG  420
QEIVASDIDA VQLSRMPSLD MDMIWDALLV SDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-20267328163ATERF1
3gcc_A6e-20267328163ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.6751s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559440.0EF155944.1 Populus trichocarpa RAP2-like protein (RAP2L3) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002323984.30.0ethylene-responsive transcription factor ERF062
TrEMBLA9PL930.0A9PL93_POPTR; RAP2-like protein
STRINGPOPTR_0017s08250.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101023141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.14e-63ERF family protein