PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.5356s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | TALE | ||||||||
Protein Properties | Length: 659aa MW: 73357.4 Da PI: 6.6605 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27 | 7.4e-09 | 423 | 460 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + SapurV1A.5356s0010.1.p 423 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 460 554459******************************88 PP | |||||||
2 | BELL | 117.3 | 7.3e-38 | 285 | 355 | 2 | 72 |
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 + elqk+k+kLls+leeVd+rY++y++q+++v+ssFeavag g+a +Y slA+ka+SrhFrcL+d i+ qi SapurV1A.5356s0010.1.p 285 FIELQKRKTKLLSMLEEVDRRYRHYRDQMKAVVSSFEAVAGTGAASVYSSLASKAMSRHFRCLRDGIVAQI 355 689******************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.3E-58 | 223 | 353 | IPR006563 | POX domain |
Pfam | PF07526 | 5.6E-45 | 229 | 351 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.179 | 401 | 464 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.8E-9 | 404 | 468 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.38E-11 | 404 | 465 | No hit | No description |
SuperFamily | SSF46689 | 5.99E-17 | 405 | 470 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-27 | 407 | 470 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 8.8E-18 | 421 | 460 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 659 aa Download sequence Send to blast |
MARELCENKS TSMVSSGSFC YTDGSSSNPA IQTHLVNQIH GFESNPEMFN LTTGMEMIGF 60 SKNLQQQKSD SNSSMWKGFF NKPPNTINPG GPSSSKTIND STSGVFYQHE FSKPDFSTGI 120 SDSSNENLMA GPDHSAPWQE NRLLVDDSSL RCVFPCEGNE RPSQGLSLSL CSSNPSSIGL 180 QPFELRHTPT NQNQDNQQEE MRSFGKSPAN IQQQMMQAAN LHHQGQFQLR SSKFMGPAQD 240 LLNEFCSLGT KQGDELKQKF HKPKQWDDDQ NGSSSRKPPL QSLEFIELQK RKTKLLSMLE 300 EVDRRYRHYR DQMKAVVSSF EAVAGTGAAS VYSSLASKAM SRHFRCLRDG IVAQIHAAQK 360 ATGEKDPVAP GTTRGETPRL KVLDQALRQQ RAFQQMSMME SHPWRPQRGL PERSVSVLRA 420 WLFEHFLHPY PSDVDKHILA RQTGLSRSQV SNWFINARVR LWKPMVEEMY LEETKEQDNS 480 MASSDGVTGL DENINGRPNQ NPSSTDQKPT PDQLIRIDSE CLSSIISNPD KNDTNNSTKT 540 FQSHHVQHQQ QNFGNFGAME LDFSSYNHHT AAGVSYANDS VNNQNFNGGG VSLTLGLQQH 600 GGSGVGLAFS PASQSSLFYP RDLIEDCQQV QYSLLDGEGQ NLPYRNLMGA QLLHDLAG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 3e-15 | 410 | 468 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 3e-15 | 410 | 468 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.5356s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011029331.1 | 0.0 | PREDICTED: homeobox protein BEL1 homolog | ||||
Swissprot | Q38897 | 1e-151 | BEL1_ARATH; Homeobox protein BEL1 homolog | ||||
TrEMBL | A0A2K2BV97 | 0.0 | A0A2K2BV97_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s09720.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4650 | 20 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41410.1 | 1e-147 | TALE family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.5356s0010.1.p |
Publications ? help Back to Top | |||
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