PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.4677s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 99aa MW: 11181.4 Da PI: 10.6876 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.5 | 3.5e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie+ks rqv fskR+ g+lKKA+ELSvLCd+e aviifsstgkl+e++s SapurV1A.4677s0010.1.p 10 RIEDKSSRQVCFSKRKRGLLKKAKELSVLCDVEMAVIIFSSTGKLFEFCS 59 9***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.3E-34 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 28.805 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-27 | 3 | 70 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.01E-33 | 3 | 59 | No hit | No description |
Pfam | PF00319 | 5.5E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 99 aa Download sequence Send to blast |
MVRGKVQLQR IEDKSSRQVC FSKRKRGLLK KAKELSVLCD VEMAVIIFSS TGKLFEFCSG 60 NRHVLNSAPS IPSMLSISFR FSIFDLIVVV WKIFLVEI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-19 | 1 | 61 | 1 | 61 | MEF2C |
5f28_B | 4e-19 | 1 | 61 | 1 | 61 | MEF2C |
5f28_C | 4e-19 | 1 | 61 | 1 | 61 | MEF2C |
5f28_D | 4e-19 | 1 | 61 | 1 | 61 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that inhibit floral transition in the autonomous flowering pathway, independent of photoperiod and temperature. Acts in a dosage-dependent manner. Together with AGL24 and AP1, controls the identity of the floral meristem and regulates expression of class B, C and E genes. Promotes EFM expression to suppress flowering (PubMed:25132385). {ECO:0000269|PubMed:16679456, ECO:0000269|PubMed:18694458, ECO:0000269|PubMed:19656343, ECO:0000269|PubMed:25132385}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.4677s0010.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the floral homeotic genes AP1 and SEP3 in emerging floral meristems. Up-regulated by HUA2. {ECO:0000269|PubMed:15659097, ECO:0000269|PubMed:17428825, ECO:0000269|PubMed:18694458}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC212851 | 1e-82 | AC212851.1 Populus trichocarpa clone POP079-C10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011000973.1 | 8e-36 | PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X1 | ||||
Refseq | XP_011000975.1 | 8e-36 | PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2 | ||||
Refseq | XP_024458870.1 | 8e-36 | truncated transcription factor CAULIFLOWER A isoform X1 | ||||
Refseq | XP_024458875.1 | 8e-36 | truncated transcription factor CAULIFLOWER A isoform X2 | ||||
Swissprot | Q9FVC1 | 7e-23 | SVP_ARATH; MADS-box protein SVP | ||||
TrEMBL | A0A3N7ED90 | 2e-34 | A0A3N7ED90_POPTR; Uncharacterized protein | ||||
TrEMBL | A0A3N7FVC5 | 2e-34 | A0A3N7FVC5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s33600.1 | 2e-40 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 3e-25 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.4677s0010.1.p |