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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
SapurV1A.4211s0010.1.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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| Family |
GRAS |
| Protein Properties |
Length: 596aa MW: 65697.9 Da PI: 4.5994 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| SapurV1A.4211s0010.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 352.8 | 5.2e-108 | 229 | 595 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89
++L+ecA+ v+++ + a + L + +e +s++gdp++R+ +yf+e+L +r+a + ++ l+ +++ s+e + ++k++++++P
SapurV1A.4211s0010.1.p 229 KALVECAQLVETKADQ-AVKSLIKFKESVSENGDPVERVGFYFVEGLCRRVAV---GEVDDLKNFDQT---SEEFTLSYKALNDACP 308
79*********96665.55667789***************************8...444445455554...89999*********** PP
GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelg 173
+ kf+hltaNqaIlea+e+++++Hi+Df+i qG+QW+aLlqaLa+R++g+p ++R+ g+ +p g + +l +tg+rL +fA+ l+
SapurV1A.4211s0010.1.p 309 YSKFAHLTANQAILEATEKASKIHIVDFGIVQGIQWAALLQALATRSAGKPvRIRVSGIPAPVLGknPAASLLATGNRLLEFAKLLD 395
***********************************************88777*********9988889999**************** PP
GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260
++fef++ + + +++l+ + +rv+p+E laVn++lql++llde+ + + Lk+ ksl+Pk+v++ e e+ +n++ +l+rf +a
SapurV1A.4211s0010.1.p 396 LNFEFEP-ILTPIQELNKSCFRVEPDEDLAVNFMLQLYNLLDETPVAVE---TALKMAKSLNPKIVTLGEYEVGLNRAGYLTRFKNA 478
*******.799******************************99888877...9********************************** PP
GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk. 345
l+yy+a+f+s++ +++r+s+er vEr llg +i+ vv e+ rrer+e e+Wr +e +GF++v+ls++a++qa+ ll +++
SapurV1A.4211s0010.1.p 479 LRYYTAVFESIDPNMSRDSQERLQVERLLLGHRISGVVGPEEPGiRRERMEDRERWRVLMEGSGFESVSLSHYAMSQASILLWNYNy 565
****************************************99999*****************************************9 PP
GRAS 346 sdgyrveee.sgslvlgWkdrpLvsvSaWr 374
s y+++++ sg l+l W++ pL++vS+Wr
SapurV1A.4211s0010.1.p 566 SSLYSLDDSqSGFLTLAWNEVPLLTVSSWR 595
999****76255666**************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 596 aa
Download sequence Send
to blast |
MAYMCADSGN LMAIAQQVIQ QKQQQEQQQQ QSHHHNQQQQ FLGLNPFSLN PWPSAAMSAN 60
PNLGYGITGP AAFSDLFQSG PDTGDPSGFS FSNMEHHSGE FRFPDFTGAG GEFDSDEWMD 120
SLMNGGDSTD SSNLPSGCDA WQNSADFGIY TSDPFNTCPS RLTVGCSPPS DLNRAISNSV 180
WADPSPQEIK PTTSPQPPPQ PPPPPPTVKK ETVVVSKEIV ELSSSPVMKA LVECAQLVET 240
KADQAVKSLI KFKESVSENG DPVERVGFYF VEGLCRRVAV GEVDDLKNFD QTSEEFTLSY 300
KALNDACPYS KFAHLTANQA ILEATEKASK IHIVDFGIVQ GIQWAALLQA LATRSAGKPV 360
RIRVSGIPAP VLGKNPAASL LATGNRLLEF AKLLDLNFEF EPILTPIQEL NKSCFRVEPD 420
EDLAVNFMLQ LYNLLDETPV AVETALKMAK SLNPKIVTLG EYEVGLNRAG YLTRFKNALR 480
YYTAVFESID PNMSRDSQER LQVERLLLGH RISGVVGPEE PGIRRERMED RERWRVLMEG 540
SGFESVSLSH YAMSQASILL WNYNYSSLYS LDDSQSGFLT LAWNEVPLLT VSSWR*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KJ511863 | 0.0 | KJ511863.1 Populus euphratica GRAS/SCL transcription factor (SCL7) mRNA, complete cds. |
