PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.4137s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 707aa MW: 80013.4 Da PI: 5.7569 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 55.3 | 2.2e-17 | 58 | 142 | 2 | 89 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 + ++YAk +GF+ r ++s+k+k nge ++vC+keg+++++ k+ + r++ r gC+ + ++++dg+w+++k++l+H He SapurV1A.4137s0010.1.p 58 YLQSYAKAIGFQWRYRTSRKNKSNGERCGVRMVCTKEGTNKPRGKS---PKYFRPSGREGCNVAMSSSLQSDGRWKISKIHLQHCHE 141 5689***************************************999...8899*********************************9 PP FAR1 89 l 89 + SapurV1A.4137s0010.1.p 142 I 142 7 PP | |||||||
2 | FAR1 | 32.3 | 3.2e-10 | 195 | 272 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 f +YAk+vGF+ ++++s+k k++g++ +vCsk+ +r++ + ++ gC+ +l +++kdg+w+++k +l H He SapurV1A.4137s0010.1.p 195 FLFSYAKNVGFQWSIRTSRKDKNSGKTCGICMVCSKNKRRKRPN-----------SEGEGCDVSLCSTLQKDGQWKINKTHLRHCHE 270 6668******************************9976666554...........4589**************************** PP FAR1 89 la 90 + SapurV1A.4137s0010.1.p 271 MD 272 96 PP | |||||||
3 | FAR1 | 43.4 | 1.1e-13 | 350 | 427 | 3 | 90 |
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++YAk vGF+ rk++s+k++++gei ++vC+kegk ++ + + gC ++ +++kdg+w+++k+ leH+He+ SapurV1A.4137s0010.1.p 350 LCSYAKAVGFEWRKRTSRKNENSGEICGVRMVCNKEGKLSSLGP----------SMKKGCPVAVNSTLHKDGRWRINKIYLEHSHEI 426 579**********************************9998654..........5999***************************98 PP FAR1 90 a 90 SapurV1A.4137s0010.1.p 427 D 427 6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.2E-14 | 58 | 142 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 2.9E-6 | 195 | 272 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 3.2E-10 | 349 | 427 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 707 aa Download sequence Send to blast |
MDELFRLSIG GSANSDVNIS GVEAAGPTSL SADGADRNLI QPPYDGQTFG SLEEMVQYLQ 60 SYAKAIGFQW RYRTSRKNKS NGERCGVRMV CTKEGTNKPR GKSPKYFRPS GREGCNVAMS 120 SSLQSDGRWK ISKIHLQHCH EIDLNAIPLH MRQHLLELND RSGTEEEEEE ENEEEEEGKP 180 YDGQTFGSYA ELIQFLFSYA KNVGFQWSIR TSRKDKNSGK TCGICMVCSK NKRRKRPNSE 240 GEGCDVSLCS TLQKDGQWKI NKTHLRHCHE MDPNATPILR RWYLLALNGR LGIEEEEGKE 300 EGEEMEEGEG ETEQEEAGNS SLSSDIDRPS INPLYNGQTF GSLQELIQYL CSYAKAVGFE 360 WRKRTSRKNE NSGEICGVRM VCNKEGKLSS LGPSMKKGCP VAVNSTLHKD GRWRINKIYL 420 EHSHEIDPNA RPFLRRRQRC IPPQLRDPLV SNDRLGIEDE EEREEEEEEE EGAVSVALEQ 480 PLDSSGDEYD SPSIMEEQPS FEASFNQQSP DLAGDAGQHW KKLKRDMGKM TTSNSDNIKQ 540 LSNMERTADV LISQYSGDDV KTTLQDVRKL IIGHKNKVFH LRSSKNSAQA ECKNLYRENP 600 DLSAMIDRAK LAIQVEESKL SQLTCEEARI EEAIQNLMAK KQSVLLQKAS AAKNIDNENQ 660 KMEELKSTQE KINKAENSFR RWQNEMSYAN STFISNLMGS KMVLFK* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.4137s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011036894.1 | 0.0 | PREDICTED: histone acetyltransferase KAT6B-like | ||||
TrEMBL | A0A2K2AAK5 | 0.0 | A0A2K2AAK5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s02350.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF23115 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G06250.1 | 2e-13 | FAR1-related sequence 7 |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.4137s0010.1.p |