PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.3982s0010.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | NAC | ||||||||
Protein Properties | Length: 346aa MW: 39653.1 Da PI: 4.9056 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 177.8 | 3e-55 | 9 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 +ppGfrFhPtdeelv +yL+kkv+++k++l +vi+++d+y++ePwdL++ ++e++ewyfFs++dkky+tg+r+nrat +g+Wk SapurV1A.3982s0010.4.p 9 VPPGFRFHPTDEELVGYYLRKKVASQKIDL-DVIRDIDLYRIEPWDLQErcrIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWK 94 69****************************.9***************953432233667**************************** PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 atg+dk+v++ k++l+g++ktLvfykgrap+g+k+dW+mheyrle SapurV1A.3982s0010.4.p 95 ATGRDKSVYD-KTKLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 138 **********.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-60 | 5 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.405 | 9 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.8E-29 | 10 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0048759 | Biological Process | xylem vessel member cell differentiation | ||||
GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis | ||||
GO:1990110 | Biological Process | callus formation | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MMESMESCVP PGFRFHPTDE ELVGYYLRKK VASQKIDLDV IRDIDLYRIE PWDLQERCRI 60 GYEEQNEWYF FSHKDKKYPT GTRTNRATMA GFWKATGRDK SVYDKTKLIG MRKTLVFYKG 120 RAPNGQKSDW IMHEYRLESD ENGPPQEEGW VVCRAFKKRA TGQNKSIEGW DSSYFYEESS 180 GVSSVVDPID YIARQPQNFL AQNFLCNQET EGDNLSFMHS ENYVQLPQLE SPSLPLIKRP 240 SSSISLISEN NNSNRVEEEQ NRMLSGNSAQ KVTDWRALDK FVASQLSHED RYDGDGVSSF 300 VGAENNSSDM PLLLLQSGRD EGNNKFNGFL SSSPDCDFGI CIFEK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-50 | 6 | 159 | 12 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00266 | DAP | Transfer from AT2G18060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.3982s0010.4.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB599932 | 0.0 | AB599932.1 Populus trichocarpa PtVNS01 mRNA for transcription factor, complete cds. | |||
GenBank | HQ215855 | 0.0 | HQ215855.1 Populus trichocarpa wood-associated NAC domain transcription factor 5A (WND5A) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024460834.1 | 0.0 | NAC domain-containing protein 37 isoform X2 | ||||
Swissprot | Q9SL41 | 1e-171 | NAC37_ARATH; NAC domain-containing protein 37 | ||||
TrEMBL | A0A2K1ZMJ0 | 0.0 | A0A2K1ZMJ0_POPTR; NAC family protein | ||||
STRING | POPTR_0007s13910.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18060.1 | 1e-149 | vascular related NAC-domain protein 1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.3982s0010.4.p |
Publications ? help Back to Top | |||
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