PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.3870s0010.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

FAR1

Protein Properties

Length: 815aa MW: 90946.1 Da PI: 6.2166

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.3870s0010.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57.5	4.5e-18	62	134	2	88
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fY+eYA+++GFs+++++ ++ k++g + r+fvC +eg ++++ ++ C+a+l+++++++gkw+vt++++eHnH+ SapurV1A.3870s0010.1.p 62 FYDEYARHLGFSTKVAHFTRPKTDGATAAREFVCGREGLKRRSADS--------------CHAMLRIELKSQGKWVVTQFVKEHNHS 134 9************************************9998877..............************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.8E-15	62	135	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.1E-23	315	400	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.165	586	622	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.1E-10	592	620	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.8E-8	597	624	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 815 aa Download sequence Send to blast
MDVHVIDDEE GTSHRGVAYN GDAERDDSGE ANNGEHDEDG AAELHEPCVG MEFDLENAAK 60 TFYDEYARHL GFSTKVAHFT RPKTDGATAA REFVCGREGL KRRSADSCHA MLRIELKSQG 120 KWVVTQFVKE HNHSTVNPSK VHYLRPRRHF AGAAKSAAKT GQGVGVFPSG DGQAAAVVTG 180 VVSQGVGVAS SVGCQGGGVV PSGVMYLSMD GNRTPVSETN HGVRNTTPAE PNRVVKTSTA 240 VNYIVRPSNQ KRTLGRDAQN LLEYFKKMQA ENPGFFYAIQ LDDENRMANV FWADARSRTA 300 YTHFGDAVTF ETNSRVNQYR VPFAPFTGLN HHGQTIIFGC AILLDDSEAS FVWLFKTFLT 360 AMYDQQPASL ITSQDKAIQT AVSQVFPDTR HCISKWHVLR EGQEKLANVC NAHPNFQLEL 420 YNCINLTETI EEFENSWIDI LDKYDLRGHD WLQSLYDARA QWVPVYFRDS FFAVMFPNQG 480 FDGTFFDGYV NQQTALPMFF RQYERALDNW FERELEADFD TICTTPVLRT PSPMEKQAAN 540 LYTRKIFAKF QEELVETFVY TANRIEGDAA ISTFRVAKFE DDQRAYMVSL NYPEMRANCS 600 CQMFEYSGIL CRHVLTVFTV TNVLTLPPHY ILKRWTRNAK TGAGTDDRGV DLPGEESLTL 660 RYNNLCREAI KYAEEGAIAV ETYNIAMSAL REGGKKVAVV KKNVAKVSPP GSQGSGTGHE 720 DWKTSTSVSD TTPFLWPPQD EVTRRFNLND TGPPLQSVAD LNLPRMAPVS LQRDDGPPGN 780 MAVLPCLKSM TWVMENKSST PGNRVAVINL KVCI*

Sequence ? help Back to Top

Protein Sequence Length: 815 aa Download sequence Send to blast

MDVHVIDDEE GTSHRGVAYN GDAERDDSGE ANNGEHDEDG AAELHEPCVG MEFDLENAAK  60
TFYDEYARHL GFSTKVAHFT RPKTDGATAA REFVCGREGL KRRSADSCHA MLRIELKSQG  120
KWVVTQFVKE HNHSTVNPSK VHYLRPRRHF AGAAKSAAKT GQGVGVFPSG DGQAAAVVTG  180
VVSQGVGVAS SVGCQGGGVV PSGVMYLSMD GNRTPVSETN HGVRNTTPAE PNRVVKTSTA  240
VNYIVRPSNQ KRTLGRDAQN LLEYFKKMQA ENPGFFYAIQ LDDENRMANV FWADARSRTA  300
YTHFGDAVTF ETNSRVNQYR VPFAPFTGLN HHGQTIIFGC AILLDDSEAS FVWLFKTFLT  360
AMYDQQPASL ITSQDKAIQT AVSQVFPDTR HCISKWHVLR EGQEKLANVC NAHPNFQLEL  420
YNCINLTETI EEFENSWIDI LDKYDLRGHD WLQSLYDARA QWVPVYFRDS FFAVMFPNQG  480
FDGTFFDGYV NQQTALPMFF RQYERALDNW FERELEADFD TICTTPVLRT PSPMEKQAAN  540
LYTRKIFAKF QEELVETFVY TANRIEGDAA ISTFRVAKFE DDQRAYMVSL NYPEMRANCS  600
CQMFEYSGIL CRHVLTVFTV TNVLTLPPHY ILKRWTRNAK TGAGTDDRGV DLPGEESLTL  660
RYNNLCREAI KYAEEGAIAV ETYNIAMSAL REGGKKVAVV KKNVAKVSPP GSQGSGTGHE  720
DWKTSTSVSD TTPFLWPPQD EVTRRFNLND TGPPLQSVAD LNLPRMAPVS LQRDDGPPGN  780
MAVLPCLKSM TWVMENKSST PGNRVAVINL KVCI*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.3870s0010.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002313618.3	0.0	protein FAR1-RELATED SEQUENCE 3
Refseq	XP_024464516.1	0.0	protein FAR1-RELATED SEQUENCE 3
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A2K1Z8K8	0.0	A0A2K1Z8K8_POPTR; Uncharacterized protein
STRING	POPTR_0009s16010.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Link Out ? help Back to Top
Phytozome	SapurV1A.3870s0010.1.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]